This directory contains reciprocal-best netted chains for galGal6-cotJap2.

 - galGal6.cotJap2.rbest.net.gz: galGal6-referenced recip.best net to cotJap2.
 - galGal6.cotJap2.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from galGal6 to cotJap2 through the recip.best net.

 - cotJap2.galGal6.rbest.net.gz: cotJap2-referenced recip.best net.
 - cotJap2.galGal6.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/galGal6.cotJap2.rbest.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                           Last modified      Size  Description
      Parent Directory                                    -   
      axtRBestNet/                   2018-10-27 03:23    -   
      md5sum.txt                     2018-10-26 20:49  256   
      cotJap2.galGal6.rbest.chain.gz 2018-10-26 20:48   21M  
      galGal6.cotJap2.rbest.chain.gz 2018-10-26 20:49   21M  
      cotJap2.galGal6.rbest.net.gz   2018-10-26 20:48   31M  
      galGal6.cotJap2.rbest.net.gz   2018-10-26 20:49   37M