This directory contains reciprocal-best netted chains for galGal6-colLiv1.
- galGal6.colLiv1.rbest.net.gz: galGal6-referenced recip.best net to colLiv1.
- galGal6.colLiv1.rbest.chain.gz: chains extracted from the recip.best
net. These can be passed to the liftOver program to translate coords
from galGal6 to colLiv1 through the recip.best net.
- colLiv1.galGal6.rbest.net.gz: colLiv1-referenced recip.best net.
- colLiv1.galGal6.rbest.chain.gz: recip.best "liftOver" chains.
- axtRBestNet/galGal6.colLiv1.rbest.axt.gz reciprocal best alignments in
AXT format
See also, description of AXT format::
http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
http://genome.ucsc.edu/goldenPath/help/net.html
Name Last modified Size Description
Parent Directory -
colLiv1.galGal6.rbest.net.gz 2018-10-18 19:10 78M
colLiv1.galGal6.rbest.chain.gz 2018-10-18 19:10 42M
galGal6.colLiv1.rbest.chain.gz 2018-10-18 19:11 42M
galGal6.colLiv1.rbest.net.gz 2018-10-18 19:12 65M
md5sum.txt 2018-10-18 19:12 256
axtRBestNet/ 2018-10-19 00:19 -