This directory contains reciprocal-best netted chains for galGal6-amaVit1.

 - galGal6.amaVit1.rbest.net.gz: galGal6-referenced recip.best net to amaVit1.
 - galGal6.amaVit1.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from galGal6 to amaVit1 through the recip.best net.

 - amaVit1.galGal6.rbest.net.gz: amaVit1-referenced recip.best net.
 - amaVit1.galGal6.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/galGal6.amaVit1.rbest.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                           Last modified      Size  Description
      Parent Directory                                    -   
      amaVit1.galGal6.rbest.chain.gz 2018-10-17 18:32   46M  
      amaVit1.galGal6.rbest.net.gz   2018-10-17 18:32   78M  
      axtRBestNet/                   2018-10-18 03:00    -   
      galGal6.amaVit1.rbest.chain.gz 2018-10-17 18:33   46M  
      galGal6.amaVit1.rbest.net.gz   2018-10-17 18:34   71M  
      md5sum.txt                     2018-10-17 18:34  256