This directory contains reciprocal-best netted chains for galGal5-rn6.

 - galGal5.rn6.rbest.net.gz: galGal5-referenced recip.best net to rn6.
 - galGal5.rn6.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from galGal5 to rn6 through the recip.best net.

 - rn6.galGal5.rbest.net.gz: rn6-referenced recip.best net.
 - rn6.galGal5.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/galGal5.rn6.rbest.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                       Last modified      Size  Description
      Parent Directory                                -   
      rn6.galGal5.rbest.net.gz   2016-05-04 14:01   11M  
      rn6.galGal5.rbest.chain.gz 2016-05-04 14:01  6.4M  
      galGal5.rn6.rbest.chain.gz 2016-05-04 14:01  6.4M  
      galGal5.rn6.rbest.net.gz   2016-05-04 14:01   11M  
      md5sum.txt                 2016-05-04 14:01  240   
      axtRBestNet/               2016-05-04 16:52    -