This directory contains a dump of the UCSC genome annotation database for
the Oct. 2004 assembly of the fugu genome (fr2, JGI V4.0).
The annotations were generated by UCSC and collaborators worldwide.
This assembly was produced by the US DOE Joint Genome Institute (JGI).
For more information on the fugu genome, see the project website:
http://genome.jgi-psf.org/Takru4/Takru4.info.html
http://www.fugu-sg.org/
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=fr2
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
---------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/fr2/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
1. These data have been freely provided by the JGI for use in the
UCSC Genome Browser.
Name Last modified Size Description
Parent Directory -
xenoMrna.txt.gz 2020-08-21 19:09 231M
chrUn_chainOryLat2Link.txt.gz 2008-11-16 08:35 192M
chainDanRer7Link.txt.gz 2011-02-27 21:44 125M
chainTetNig2Link.txt.gz 2010-03-14 10:52 110M
chrUn_chainGasAcu1Link.txt.gz 2007-04-11 11:47 105M
chainHg19Link.txt.gz 2009-10-11 05:54 41M
chainDanRer7.txt.gz 2011-02-27 21:43 35M
chrUn_chainOryLat2.txt.gz 2008-11-16 08:33 32M
chrUn_chainMm9Link.txt.gz 2007-09-15 14:46 30M
multiz5way.txt.gz 2007-04-11 11:58 20M
netTetNig2.txt.gz 2010-03-14 10:52 16M
chrUn_chainGalGal3Link.txt.gz 2007-04-11 11:45 15M
all_est.txt.gz 2019-03-17 09:24 14M
chrUn_est.txt.gz 2019-03-17 09:24 13M
netOryLat2.txt.gz 2008-11-16 08:34 12M
chainTetNig2.txt.gz 2010-03-14 10:51 12M
windowmaskerSdust.txt.gz 2007-04-11 12:02 12M
multiz5wayFrames.txt.gz 2007-04-11 11:59 11M
chrUn_chainGasAcu1.txt.gz 2007-04-11 11:45 11M
netGasAcu1.txt.gz 2007-04-11 12:00 11M
phastCons5.txt.gz 2007-04-11 12:02 10M
phastConsElements5way.txt.gz 2007-04-11 12:02 10M
netDanRer7.txt.gz 2011-02-27 21:42 8.5M
chrUn_intronEst.txt.gz 2019-03-17 09:24 8.1M
chainHg19.txt.gz 2009-10-11 05:54 7.5M
ensPep.txt.gz 2018-08-05 06:34 7.3M
netHg19.txt.gz 2009-10-11 05:54 5.1M
netMm9.txt.gz 2007-09-15 14:47 4.9M
chrUn_rmsk.txt.gz 2007-04-11 11:55 4.7M
chrUn_chainMm9.txt.gz 2007-09-15 14:46 4.7M
netGalGal3.txt.gz 2007-04-11 11:59 3.9M
ensGene.txt.gz 2018-08-05 06:34 3.2M
estOrientInfo.txt.gz 2019-03-17 09:24 3.2M
blastHg18KG.txt.gz 2009-12-20 11:35 2.9M
simpleRepeat.txt.gz 2007-04-11 12:02 2.7M
augustusGene.txt.gz 2015-07-26 13:30 2.5M
multiz5waySummary.txt.gz 2007-04-11 11:59 1.9M
chrUn_chainGalGal3.txt.gz 2007-04-11 11:45 1.8M
gc5Base.txt.gz 2007-04-11 11:57 1.6M
ensGtp.txt.gz 2018-08-05 06:34 392K
chrM_est.txt.gz 2019-03-17 09:24 283K
ensemblToGeneName.txt.gz 2018-08-05 06:34 190K
microsat.txt.gz 2015-08-23 16:31 166K
chrUn_gold.txt.gz 2007-04-11 11:55 125K
ensemblSource.txt.gz 2018-08-05 06:34 119K
chrUn_gap.txt.gz 2007-04-11 11:55 85K
chrUn_mrna.txt.gz 2020-05-08 00:49 77K
all_mrna.txt.gz 2020-05-08 00:35 77K
gbLoaded.txt.gz 2020-08-21 19:31 34K
trackDb.txt.gz 2023-03-28 13:49 29K
mrnaOrientInfo.txt.gz 2020-05-08 00:49 18K
tRNAs.txt.gz 2012-04-15 21:41 18K
chrM_chainMm9Link.txt.gz 2007-09-15 14:46 16K
tableDescriptions.txt.gz 2024-11-23 02:03 5.9K
tableList.txt.gz 2024-11-24 03:13 4.3K
chrM_chainGalGal3Link.txt.gz 2007-04-11 09:29 3.0K
chrM_chainOryLat2Link.txt.gz 2008-11-16 08:34 2.6K
netHg19.sql 2009-10-11 05:54 2.3K
blastHg18KG.sql 2009-12-20 11:35 2.3K
netOryLat2.sql 2008-11-16 08:34 2.2K
netGasAcu1.sql 2007-04-11 11:59 2.2K
netGalGal3.sql 2007-04-11 11:59 2.2K
netMm9.sql 2007-09-15 14:47 2.2K
xenoMrna.sql 2020-08-21 19:09 2.1K
all_mrna.sql 2020-05-08 00:35 2.1K
chrUn_mrna.sql 2020-05-08 00:49 2.1K
chrUn_intronEst.sql 2019-03-17 09:24 2.1K
chrM_intronEst.sql 2016-07-03 06:35 2.1K
all_est.sql 2019-03-17 09:24 2.1K
chrUn_est.sql 2019-03-17 09:24 2.1K
chrM_mrna.sql 2016-07-03 06:35 2.1K
chrM_est.sql 2019-03-17 09:24 2.1K
chrM_chainMm9.txt.gz 2007-09-15 14:46 2.1K
trackDb.sql 2023-03-28 13:49 2.1K
netTetNig2.sql 2010-03-14 10:52 2.0K
netDanRer7.sql 2011-02-27 21:42 2.0K
simpleRepeat.sql 2007-04-11 12:02 2.0K
augustusGene.sql 2015-07-26 13:30 1.9K
ensGene.sql 2018-08-05 06:34 1.9K
chrUn_rmsk.sql 2007-04-11 11:55 1.8K
chrM_rmsk.sql 2007-04-11 09:29 1.8K
mrnaOrientInfo.sql 2020-05-08 00:49 1.8K
chainHg19.sql 2009-10-11 05:54 1.8K
estOrientInfo.sql 2019-03-17 09:24 1.8K
hgFindSpec.sql 2023-03-28 13:49 1.8K
phastCons5.sql 2007-04-11 12:01 1.7K
gc5Base.sql 2007-04-11 11:57 1.7K
tRNAs.sql 2012-04-15 21:41 1.7K
chrUn_chainOryLat2.sql 2008-11-16 08:33 1.7K
chrUn_chainGasAcu1.sql 2007-04-11 11:45 1.7K
chrUn_chainGalGal3.sql 2007-04-11 11:45 1.7K
chrM_chainOryLat2.sql 2008-11-16 08:34 1.7K
chrM_chainGasAcu1.sql 2007-04-11 09:29 1.7K
chrM_chainGalGal3.sql 2007-04-11 09:29 1.7K
chrUn_chainMm9.sql 2007-09-15 14:46 1.6K
chrM_chainMm9.sql 2007-09-15 14:46 1.6K
chainTetNig2.sql 2010-03-14 10:51 1.6K
chainDanRer7.sql 2011-02-27 21:42 1.6K
gbLoaded.sql 2020-08-21 19:31 1.6K
chrUn_gold.sql 2007-04-11 11:55 1.6K
chrM_gold.sql 2007-04-11 09:29 1.6K
tableList.sql 2024-11-24 03:13 1.6K
multiz5wayFrames.sql 2007-04-11 11:58 1.6K
history.sql 2010-07-04 15:43 1.5K
chainHg19Link.sql 2009-10-11 05:54 1.5K
chrUn_gap.sql 2007-04-11 11:55 1.5K
chrM_gap.sql 2007-04-11 09:29 1.5K
microsat.sql 2015-08-23 16:31 1.5K
chainTetNig2Link.sql 2010-03-14 10:51 1.5K
chainDanRer7Link.sql 2011-02-27 21:43 1.5K
multiz5waySummary.sql 2007-04-11 11:59 1.5K
phastConsElements5way.sql 2007-04-11 12:02 1.4K
tableDescriptions.sql 2024-11-23 02:03 1.4K
chrUn_chainOryLat2Link.sql 2008-11-16 08:34 1.4K
chrUn_chainGasAcu1Link.sql 2007-04-11 11:45 1.4K
chrUn_chainGalGal3Link.sql 2007-04-11 11:45 1.4K
chromAlias.sql 2018-08-05 06:34 1.4K
chrM_chainOryLat2Link.sql 2008-11-16 08:34 1.4K
chrM_chainGasAcu1Link.sql 2007-04-11 09:29 1.4K
chrM_chainGalGal3Link.sql 2007-04-11 09:29 1.4K
ensGtp.sql 2018-08-05 06:34 1.4K
multiz5way.sql 2007-04-11 11:58 1.4K
chrUn_chainMm9Link.sql 2007-09-15 14:46 1.4K
chrM_chainMm9Link.sql 2007-09-15 14:46 1.4K
ensemblToGeneName.sql 2018-08-05 06:34 1.4K
grp.sql 2014-03-02 03:40 1.4K
bigFiles.sql 2024-11-24 03:13 1.4K
ensemblSource.sql 2018-08-05 06:34 1.3K
ensPep.sql 2018-08-05 06:34 1.3K
windowmaskerSdust.sql 2007-04-11 12:02 1.3K
extFile.sql 2007-04-11 11:56 1.3K
chromInfo.sql 2007-04-11 11:55 1.2K
chrM_chainOryLat2.txt.gz 2008-11-16 08:34 803
history.txt.gz 2010-07-04 15:43 781
hgFindSpec.txt.gz 2023-03-28 13:49 749
chrM_chainGasAcu1Link.txt.gz 2007-04-11 09:29 550
chrM_chainGalGal3.txt.gz 2007-04-11 09:29 395
grp.txt.gz 2014-03-02 03:40 208
extFile.txt.gz 2007-04-11 11:56 102
chrM_rmsk.txt.gz 2007-04-11 09:29 97
chrM_chainGasAcu1.txt.gz 2007-04-11 09:29 87
chromInfo.txt.gz 2007-04-11 11:55 78
chromAlias.txt.gz 2018-08-05 06:34 51
chrM_intronEst.txt.gz 2016-07-03 06:35 39
chrM_mrna.txt.gz 2016-07-03 06:35 34
chrM_gold.txt.gz 2007-04-11 09:29 34
chrM_gap.txt.gz 2007-04-11 09:29 33
bigFiles.txt.gz 2024-11-24 03:13 33