This directory contains the v.3.0 draft assembly of the Fugu
rubripes genome (fr1, Aug. 2002) provided by the US DOE Joint
Genome Institute (JGI). The annotations are from UCSC and collaborators
worldwide.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=fr1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
---------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu,
then go to the directory goldenPath/fr1/database/. To download
multiple files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the annotations in this directory are freely usable for any purpose.
Name Last modified Size Description
Parent Directory -
all_est.sql 2019-03-17 09:24 2.1K
all_est.txt.gz 2019-03-17 09:24 14M
all_mrna.sql 2020-05-08 00:49 2.1K
all_mrna.txt.gz 2020-05-08 00:49 77K
augustusGene.sql 2015-07-26 13:30 1.9K
augustusGene.txt.gz 2015-07-26 13:30 2.6M
bigFiles.sql 2024-11-17 03:34 1.4K
bigFiles.txt.gz 2024-11-17 03:34 33
blastHg17KG.sql 2013-10-01 12:48 1.3K
blastHg17KG.txt.gz 2005-05-14 05:58 3.2M
chrUn_blatHg16.sql 2013-10-01 12:48 1.3K
chrUn_blatHg16.txt.gz 2003-09-24 11:07 13M
chrUn_chainDanRer4.sql 2006-05-29 02:25 1.6K
chrUn_chainDanRer4.txt.gz 2006-05-29 02:26 17M
chrUn_chainDanRer4Link.sql 2006-05-29 02:26 1.4K
chrUn_chainDanRer4Link.txt.gz 2006-05-29 02:30 103M
chrUn_chainGasAcu1.sql 2007-03-29 09:33 1.7K
chrUn_chainGasAcu1.txt.gz 2007-03-29 09:33 11M
chrUn_chainGasAcu1Link.sql 2007-03-29 09:33 1.4K
chrUn_chainGasAcu1Link.txt.gz 2007-03-29 09:35 99M
chrUn_chainHg18.sql 2013-10-01 12:48 852
chrUn_chainHg18.txt.gz 2006-04-16 07:20 12M
chrUn_chainHg18Link.sql 2013-10-01 12:48 575
chrUn_chainHg18Link.txt.gz 2006-04-16 07:21 54M
chrUn_chainMm8.sql 2013-10-01 12:48 808
chrUn_chainMm8.txt.gz 2006-04-28 03:42 6.1M
chrUn_chainMm8Link.sql 2013-10-01 12:48 573
chrUn_chainMm8Link.txt.gz 2006-04-28 03:42 34M
chrUn_est.sql 2019-03-17 09:24 2.1K
chrUn_est.txt.gz 2019-03-17 09:24 14M
chrUn_gap.sql 2013-10-01 12:48 704
chrUn_gap.txt.gz 2003-09-30 06:53 476K
chrUn_gold.sql 2013-10-01 12:48 781
chrUn_gold.txt.gz 2003-09-24 11:07 326K
chrUn_intronEst.sql 2019-03-17 09:24 2.1K
chrUn_intronEst.txt.gz 2019-03-17 09:24 7.6M
chrUn_mrna.sql 2020-05-08 00:49 2.1K
chrUn_mrna.txt.gz 2020-05-08 00:49 77K
chrUn_rmsk.sql 2013-10-01 12:48 1.0K
chrUn_rmsk.txt.gz 2003-09-24 11:07 3.8M
chromInfo.sql 2013-10-01 12:48 394
chromInfo.txt.gz 2003-09-24 11:07 70
cpgIsland.sql 2013-10-01 12:48 706
cpgIsland.txt.gz 2003-09-24 11:07 754K
ecoresHg16.sql 2013-10-01 12:48 944
ecoresHg16.txt.gz 2004-06-10 09:51 1.0M
ecoresRn3.sql 2013-10-01 12:48 942
ecoresRn3.txt.gz 2004-06-10 09:51 1.0M
ensGene.sql 2013-10-01 12:48 740
ensGene.txt.gz 2003-09-24 11:07 1.6M
ensGtp.sql 2013-10-01 12:48 436
ensGtp.txt.gz 2003-11-18 10:11 273K
ensPep.sql 2013-10-01 12:48 320
ensPep.txt.gz 2003-11-18 10:11 4.9M
estOrientInfo.sql 2019-03-17 09:24 1.8K
estOrientInfo.txt.gz 2019-03-17 09:24 3.3M
extFile.sql 2013-10-01 12:48 443
extFile.txt.gz 2003-11-18 10:10 32
gbDelete_tmp.sql 2013-10-01 12:48 322
gbDelete_tmp.txt.gz 2005-09-27 05:01 180K
gbLoaded.sql 2020-08-21 19:59 1.6K
gbLoaded.txt.gz 2020-08-21 19:59 41K
gcPercent.sql 2013-10-01 12:48 544
gcPercent.txt.gz 2003-09-24 11:07 108K
genomicSuperDups.sql 2006-07-05 07:02 2.5K
genomicSuperDups.txt.gz 2006-07-05 07:02 5.4M
genscan.sql 2013-10-01 12:48 740
genscan.txt.gz 2003-09-24 11:07 2.1M
genscanPep.sql 2013-10-01 12:48 328
genscanPep.txt.gz 2003-09-24 11:07 8.6M
grp.sql 2014-03-02 03:40 1.4K
grp.txt.gz 2014-03-02 03:40 223
hgFindSpec.sql 2023-03-28 13:49 1.8K
hgFindSpec.txt.gz 2023-03-28 13:49 738
history.sql 2013-10-01 12:48 499
history.txt.gz 2003-09-24 11:07 263
microsat.sql 2015-08-23 16:25 1.5K
microsat.txt.gz 2015-08-23 16:25 136K
mrnaOrientInfo.sql 2020-05-08 00:49 1.8K
mrnaOrientInfo.txt.gz 2020-05-08 00:49 19K
netDanRer4.sql 2006-05-29 02:37 2.2K
netDanRer4.txt.gz 2006-05-29 02:37 9.1M
netGasAcu1.sql 2007-03-29 09:32 2.2K
netGasAcu1.txt.gz 2007-03-29 09:33 10M
netHg18.sql 2013-10-01 12:48 1.3K
netHg18.txt.gz 2006-04-16 07:22 4.9M
netMm8.sql 2013-10-01 12:48 1.3K
netMm8.txt.gz 2006-04-28 03:43 4.8M
seq.sql 2013-10-01 12:48 588
seq.txt.gz 2003-11-18 10:10 28
simpleRepeat.sql 2013-10-01 12:48 1.1K
simpleRepeat.txt.gz 2003-09-24 11:07 2.0M
tableDescriptions.sql 2024-11-16 02:03 1.4K
tableDescriptions.txt.gz 2024-11-16 02:03 5.6K
tableList.sql 2024-11-17 03:34 1.6K
tableList.txt.gz 2024-11-17 03:34 3.1K
trackDb.sql 2023-03-28 13:49 2.1K
trackDb.txt.gz 2023-03-28 13:49 21K