This directory contains the Dec. 2008 (NHGRI/GTB V17e/felCat4) assembly of the cat genome
(catChrV17e, NHGRI/Genome Technology Branch (NCBI project 10703, accession ACBE0100000)), as well as repeat annotations and GenBank sequences.
This assembly was produced by the Agencourt Bioscience Corporation and
Hill's Pet Nutrition, Inc.. The mitochondrial genome was sequenced by
Laboratory of Genomic Diversity.
For more information on the cat genome, see the project website:
http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=10703
http://www.beckmangenomics.com/
http://www.hillspet.com/
http://home.ncifcrf.gov/ccr/lgd/comparative_genome/catgenome/index_n.asp
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=felCat4
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
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If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu
[username: anonymous, password: your email address], then cd to the
directory goldenPath/felCat4/database/. To download multiple files, use
the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the files and tables in this directory are freely usable for any purpose.
Name Last modified Size Description
Parent Directory -
bigFiles.txt.gz 2024-11-17 03:37 33
extFile.txt.gz 2011-08-07 08:53 80
grp.txt.gz 2014-03-02 03:40 208
history.txt.gz 2010-07-30 14:57 558
hgFindSpec.txt.gz 2023-03-28 13:49 768
nscanPep.sql 2010-11-07 15:10 1.3K
chromInfo.sql 2010-07-30 14:53 1.3K
grp.sql 2014-03-02 03:40 1.3K
extFile.sql 2011-08-07 08:53 1.4K
bigFiles.sql 2024-11-17 03:37 1.4K
tableDescriptions.sql 2024-11-16 02:03 1.4K
multiz6way.sql 2011-08-07 08:53 1.5K
chainMm9Link.sql 2010-07-30 14:59 1.5K
chainHg19Link.sql 2010-07-30 14:32 1.5K
ctgPos2.sql 2010-07-30 14:53 1.5K
chainAilMel1Link.sql 2010-07-30 15:03 1.5K
chainCanFam2Link.sql 2010-07-30 14:41 1.5K
chainMonDom5Link.sql 2010-07-30 14:38 1.5K
microsat.sql 2015-08-23 16:18 1.5K
phastConsElements6way.sql 2011-08-07 08:53 1.5K
history.sql 2010-07-30 14:57 1.5K
multiz6waySummary.sql 2011-08-07 08:54 1.5K
gap.sql 2010-07-30 15:15 1.5K
tableList.sql 2024-11-17 03:37 1.6K
gold.sql 2010-10-24 14:29 1.6K
gbLoaded.sql 2020-08-21 18:23 1.6K
cpgIslandExt.sql 2010-07-30 14:51 1.6K
chainMm9.sql 2010-07-30 14:53 1.6K
chainHg19.sql 2010-07-30 14:55 1.6K
chainAilMel1.sql 2010-07-30 14:54 1.6K
chainCanFam2.sql 2010-07-30 15:13 1.6K
chainMonDom5.sql 2010-07-30 14:57 1.6K
multiz6wayFrames.sql 2011-08-07 08:53 1.7K
tRNAs.sql 2012-04-23 00:03 1.7K
gc5Base.sql 2010-07-30 14:56 1.7K
phyloP6way.sql 2011-08-07 08:52 1.7K
phastCons6way.sql 2011-08-07 08:54 1.7K
cpgIslandExtUnmasked.sql 2014-06-01 12:58 1.7K
refFlat.sql 2020-08-21 18:06 1.7K
xenoRefFlat.sql 2020-08-21 18:06 1.7K
hgFindSpec.sql 2023-03-28 13:49 1.8K
estOrientInfo.sql 2016-05-15 08:37 1.8K
rmsk.sql 2010-07-30 15:15 1.8K
mrnaOrientInfo.sql 2020-08-21 18:06 1.8K
nscanGene.sql 2010-11-07 15:10 1.9K
simpleRepeat.sql 2010-07-30 14:53 1.9K
nestedRepeats.sql 2010-07-30 15:15 1.9K
augustusGene.sql 2015-07-26 13:23 1.9K
refGene.sql 2020-08-21 18:06 1.9K
xenoRefGene.sql 2020-08-21 18:06 2.0K
netMm9.sql 2010-07-30 15:12 2.0K
netHg19.sql 2010-07-30 14:55 2.0K
netAilMel1.sql 2010-07-30 14:40 2.0K
netCanFam2.sql 2010-07-30 14:58 2.0K
netMonDom5.sql 2010-07-30 15:14 2.0K
blastHg18KG.sql 2011-07-17 08:58 2.1K
trackDb.sql 2023-03-28 13:49 2.1K
all_est.sql 2016-05-15 08:37 2.1K
xenoMrna.sql 2016-02-21 15:39 2.1K
intronEst.sql 2016-05-15 08:37 2.1K
all_mrna.sql 2020-08-21 18:01 2.1K
refSeqAli.sql 2020-08-21 18:10 2.1K
xenoRefSeqAli.sql 2020-08-21 18:10 2.1K
tableList.txt.gz 2024-11-17 03:37 3.6K
tableDescriptions.txt.gz 2024-11-16 02:03 6.2K
ctgPos2.txt.gz 2010-07-30 14:53 6.8K
estOrientInfo.txt.gz 2016-05-15 08:37 14K
intronEst.txt.gz 2016-05-15 08:37 18K
refFlat.txt.gz 2020-08-21 18:06 33K
refGene.txt.gz 2020-08-21 18:06 38K
trackDb.txt.gz 2023-03-28 13:49 38K
refSeqAli.txt.gz 2020-08-21 18:10 40K
all_est.txt.gz 2016-05-15 08:37 40K
gbLoaded.txt.gz 2020-08-21 18:23 43K
mrnaOrientInfo.txt.gz 2020-08-21 18:06 55K
tRNAs.txt.gz 2012-04-23 00:03 85K
all_mrna.txt.gz 2020-08-21 18:01 229K
chromInfo.txt.gz 2010-07-30 14:53 513K
microsat.txt.gz 2015-08-23 16:18 956K
cpgIslandExt.txt.gz 2010-07-30 14:52 1.2M
cpgIslandExtUnmasked.txt.gz 2014-06-01 12:58 1.4M
nscanGene.txt.gz 2010-11-07 15:10 1.8M
augustusGene.txt.gz 2015-07-26 13:23 1.9M
blastHg18KG.txt.gz 2011-07-17 08:58 2.8M
nscanPep.txt.gz 2010-11-07 15:10 5.0M
gap.txt.gz 2010-07-30 15:15 6.4M
multiz6wayFrames.txt.gz 2011-08-07 08:53 9.2M
gold.txt.gz 2010-10-24 14:29 9.6M
phastConsElements6way.txt.gz 2011-08-07 08:53 10M
nestedRepeats.txt.gz 2010-07-30 15:15 11M
multiz6waySummary.txt.gz 2011-08-07 08:54 12M
gc5Base.txt.gz 2010-07-30 14:57 13M
netMonDom5.txt.gz 2010-07-30 15:14 15M
simpleRepeat.txt.gz 2010-07-30 14:53 18M
chainMonDom5.txt.gz 2010-07-30 14:57 27M
chainMm9.txt.gz 2010-07-30 14:53 32M
xenoRefFlat.txt.gz 2020-08-21 18:06 33M
xenoRefSeqAli.txt.gz 2020-08-21 18:10 36M
xenoRefGene.txt.gz 2020-08-21 18:06 36M
chainHg19.txt.gz 2010-07-30 14:55 39M
netMm9.txt.gz 2010-07-30 15:13 52M
netAilMel1.txt.gz 2010-07-30 14:40 58M
netHg19.txt.gz 2010-07-30 14:56 60M
netCanFam2.txt.gz 2010-07-30 14:58 61M
phastCons6way.txt.gz 2011-08-07 08:54 62M
phyloP6way.txt.gz 2011-08-07 08:52 64M
multiz6way.txt.gz 2011-08-07 08:53 88M
chainCanFam2.txt.gz 2010-07-30 15:13 99M
rmsk.txt.gz 2010-07-30 15:15 101M
chainAilMel1.txt.gz 2010-07-30 14:54 119M
chainMonDom5Link.txt.gz 2010-07-30 14:38 161M
xenoMrna.txt.gz 2016-02-21 15:40 296M
chainMm9Link.txt.gz 2010-07-30 15:00 317M
chainHg19Link.txt.gz 2010-07-30 14:34 427M
chainCanFam2Link.txt.gz 2010-07-30 14:43 691M
chainAilMel1Link.txt.gz 2010-07-30 15:06 703M