This directory contains a dump of the UCSC genome annotation database for
the March 2006 assembly of the cat genome (felCat3, Broad Release 3).
The annotations were generated by UCSC and collaborators worldwide.
This assembly was produced by the Broad Institute at MIT and Harvard.
For more information on the cat genome, see the project website:
http://www.broad.mit.edu/mammals/
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=felCat3
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
---------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/felCat3/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the files and tables in this directory are freely usable for any purpose.
Name Last modified Size Description
Parent Directory -
xenoRefSeqAli.txt.gz 2020-08-21 19:00 37M
xenoRefSeqAli.sql 2020-08-21 19:00 2.1K
xenoRefGene.txt.gz 2020-08-21 18:41 36M
xenoRefGene.sql 2020-08-21 18:41 2.0K
xenoRefFlat.txt.gz 2020-08-21 18:44 32M
xenoRefFlat.sql 2020-08-21 18:44 1.7K
xenoMrna.txt.gz 2016-02-21 15:34 294M
xenoMrna.sql 2016-02-21 15:32 2.1K
trackDb.txt.gz 2023-03-28 13:49 39K
trackDb.sql 2023-03-28 13:49 2.1K
tableList.txt.gz 2024-11-24 03:26 3.5K
tableList.sql 2024-11-24 03:26 1.6K
tableDescriptions.txt.gz 2024-11-23 02:03 6.0K
tableDescriptions.sql 2024-11-23 02:03 1.4K
tRNAs.txt.gz 2012-04-22 23:54 69K
tRNAs.sql 2012-04-22 23:54 1.7K
simpleRepeat.txt.gz 2007-01-19 17:10 8.6M
simpleRepeat.sql 2007-01-19 17:10 2.0K
sgpGene.txt.gz 2007-12-22 12:46 1.7M
sgpGene.sql 2007-12-22 12:46 1.9K
rmsk.txt.gz 2007-01-19 17:09 77M
rmsk.sql 2007-01-19 17:08 1.9K
refSeqAli.txt.gz 2020-08-21 18:45 44K
refSeqAli.sql 2020-08-21 18:45 2.1K
refGene.txt.gz 2020-08-21 18:40 35K
refGene.sql 2020-08-21 18:40 1.9K
refFlat.txt.gz 2020-08-21 18:40 32K
refFlat.sql 2020-08-21 18:40 1.7K
quality.txt.gz 2007-01-19 17:08 70M
quality.sql 2007-01-19 17:06 1.7K
phastConsElements4way.txt.gz 2007-06-21 10:49 3.3M
phastConsElements4way.sql 2007-06-21 10:48 1.4K
phastCons4way.txt.gz 2007-06-21 10:48 49M
phastCons4way.sql 2007-06-21 10:47 1.7K
nscanPep.txt.gz 2007-03-14 11:24 4.0M
nscanPep.sql 2007-03-14 11:24 1.1K
nscanGene.txt.gz 2007-03-14 11:24 1.5M
nscanGene.sql 2007-03-14 11:24 2.0K
netMm8.txt.gz 2007-01-19 17:06 41M
netMm8.sql 2007-01-19 17:05 2.2K
netHg19.txt.gz 2009-09-20 09:24 55M
netHg19.sql 2009-09-20 09:24 2.3K
netCanFam2.txt.gz 2007-01-19 17:03 55M
netCanFam2.sql 2007-01-19 17:02 2.2K
multiz4waySummary.txt.gz 2007-06-21 10:47 23K
multiz4waySummary.sql 2007-06-21 10:47 1.5K
multiz4wayFrames.txt.gz 2007-06-21 10:47 5.8M
multiz4wayFrames.sql 2007-06-21 10:46 1.6K
multiz4way.txt.gz 2007-06-21 10:46 61M
multiz4way.sql 2007-06-21 10:45 1.4K
mrnaOrientInfo.txt.gz 2020-08-21 18:44 67K
mrnaOrientInfo.sql 2020-08-21 18:44 1.8K
microsat.txt.gz 2007-01-19 17:02 658K
microsat.sql 2007-01-19 17:02 1.3K
intronEst.txt.gz 2016-05-15 08:36 15K
intronEst.sql 2016-05-15 08:36 2.1K
history.txt.gz 2010-07-04 15:39 530
history.sql 2010-07-04 15:39 1.6K
hgFindSpec.txt.gz 2023-03-28 13:49 1.0K
hgFindSpec.sql 2023-03-28 13:49 1.8K
grp.txt.gz 2014-03-02 03:40 208
grp.sql 2014-03-02 03:40 1.4K
gold.txt.gz 2007-01-19 17:02 11M
gold.sql 2007-01-19 17:02 1.6K
genscanSubopt.txt.gz 2007-01-19 17:02 5.8M
genscanSubopt.sql 2007-01-19 17:02 1.5K
genscanPep.txt.gz 2007-01-19 17:02 8.6M
genscanPep.sql 2007-01-19 17:02 1.2K
genscan.txt.gz 2007-01-19 17:02 2.7M
genscan.sql 2007-01-19 17:02 1.6K
geneidPep.txt.gz 2007-02-15 09:38 7.7M
geneidPep.sql 2007-02-15 09:38 1.1K
geneid.txt.gz 2007-02-15 09:38 5.4M
geneid.sql 2007-02-15 09:38 1.9K
gc5Base.txt.gz 2007-01-19 17:02 14M
gc5Base.sql 2007-01-19 17:01 1.7K
gbLoaded.txt.gz 2020-08-21 19:02 43K
gbLoaded.sql 2020-08-21 19:02 1.6K
gap.txt.gz 2007-01-19 17:00 6.7M
gap.sql 2007-01-19 17:00 1.5K
extFile.txt.gz 2007-06-21 10:45 83
extFile.sql 2007-06-21 10:45 1.3K
estOrientInfo.txt.gz 2016-05-15 08:36 13K
estOrientInfo.sql 2016-05-15 08:36 1.8K
ensemblToGeneName.txt.gz 2012-10-21 03:37 104K
ensemblToGeneName.sql 2012-10-21 03:37 1.4K
ensemblSource.txt.gz 2012-10-21 03:37 68K
ensemblSource.sql 2012-10-21 03:37 1.4K
ensemblGeneScaffold.txt.gz 2012-10-21 03:37 818K
ensemblGeneScaffold.sql 2012-10-21 03:37 1.7K
ensPep.txt.gz 2012-10-21 03:37 4.0M
ensPep.sql 2012-10-21 03:37 1.3K
ensGtp.txt.gz 2012-10-21 03:37 180K
ensGtp.sql 2012-10-21 03:37 1.4K
ensGene.txt.gz 2012-10-21 03:37 1.7M
ensGene.sql 2012-10-21 03:37 1.9K
cpgIslandExtUnmasked.txt.gz 2014-06-01 12:51 1.5M
cpgIslandExtUnmasked.sql 2014-06-01 12:51 1.7K
cpgIslandExt.txt.gz 2007-01-19 17:00 1.1M
cpgIslandExt.sql 2007-01-19 17:00 1.6K
contigAcc.txt.gz 2007-01-19 17:00 4.0M
contigAcc.sql 2007-01-19 17:00 1.2K
chromInfo.txt.gz 2007-01-19 17:00 1.1M
chromInfo.sql 2007-01-19 17:00 1.2K
chainMm8Link.txt.gz 2007-01-19 16:57 237M
chainMm8Link.sql 2007-01-19 16:55 1.4K
chainMm8.txt.gz 2007-01-19 16:54 28M
chainMm8.sql 2007-01-19 16:54 1.6K
chainHg19Link.txt.gz 2009-09-20 09:22 341M
chainHg19Link.sql 2009-09-20 09:21 1.5K
chainHg19.txt.gz 2009-09-20 09:24 35M
chainHg19.sql 2009-09-20 09:24 1.8K
chainCanFam2Link.txt.gz 2007-01-19 16:41 522M
chainCanFam2Link.sql 2007-01-19 16:35 1.4K
chainCanFam2.txt.gz 2007-01-19 16:35 80M
chainCanFam2.sql 2007-01-19 16:34 1.7K
blastHg18KG.txt.gz 2009-12-20 11:32 1.9M
blastHg18KG.sql 2009-12-20 11:32 2.3K
bigFiles.txt.gz 2024-11-24 03:26 33
bigFiles.sql 2024-11-24 03:26 1.4K
all_mrna.txt.gz 2020-08-21 18:26 232K
all_mrna.sql 2020-08-21 18:26 2.1K
all_est.txt.gz 2016-05-15 08:36 40K
all_est.sql 2016-05-15 08:36 2.1K