This directory contains reciprocal-best netted chains for equCab3-mm10.

 - equCab3.mm10.rbest.net.gz: equCab3-referenced recip.best net to mm10.
 - equCab3.mm10.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from equCab3 to mm10 through the recip.best net.

 - mm10.equCab3.rbest.net.gz: mm10-referenced recip.best net.
 - mm10.equCab3.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/equCab3.mm10.rbest.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                        Last modified      Size  Description
      Parent Directory                                 -   
      mm10.equCab3.rbest.net.gz   2018-06-06 13:34   91M  
      mm10.equCab3.rbest.chain.gz 2018-06-06 13:36   64M  
      md5sum.txt                  2018-06-06 13:39  244   
      equCab3.mm10.rbest.net.gz   2018-06-06 13:39  136M  
      equCab3.mm10.rbest.chain.gz 2018-06-06 13:37   64M  
      axtRBestNet/                2019-07-23 15:33    -