This directory contains the Jan. 2007 assembly of the horse genome
(equCab1, Broad Institute equCab1 (1.0)) in one gzip-compressed FASTA file per chromosome.
This assembly was produced by the Broad Institute at MIT and Harvard.
For more information on the horse genome, see the project website:
http://www.broad.mit.edu/mammals/horse/.
Files included in this directory:
- chr*.fa.gz: compressed FASTA sequence of each chromosome.
Repeats from RepeatMasker and Tandem Repeats Finder (with period
of 12 or less) are shown in lower case; non-repeating sequence is
shown in upper case.
RepeatMasker was run with the -s (sensitive) setting using the
October 6 2006 (open-3-1-6) version of RepeatMasker, RELEASE 20061006.
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If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then
go to the directory goldenPath/equCab1/chromosomes. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
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The horse sequence is made freely available before scientific publication
from the Broad Institute with the following understanding:
1. The data may be freely downloaded, used in analyses, and repackaged in
databases.
2. Users are free to use the data in scientific papers analyzing particular
genes and regions if the providers of this data (the Broad Institute) are
properly acknowledged.
3. The centers producing the data reserve the right to publish the initial
large-scale analyses of the data set, including large-scale identification of
regions of evolutionary conservation and large-scale genomic assembly.
Large-scale refers to regions with size on the order of a chromosome (that is,
30 Mb or more).
4. Any redistribution of the data should carry this notice.
Name Last modified Size Description
Parent Directory -
md5sum.txt 2007-02-15 12:15 1.5K
chrM.fa.gz 2007-02-15 11:43 5.4K
chr13.fa.gz 2007-02-15 11:40 5.5M
chr12.fa.gz 2007-02-15 11:40 6.1M
chr30.fa.gz 2007-02-15 11:41 6.4M
chr31.fa.gz 2007-02-15 11:41 7.9M
chrX.fa.gz 2007-02-15 11:42 9.8M
chr29.fa.gz 2007-02-15 11:41 10M
chr25.fa.gz 2007-02-15 11:41 11M
chr27.fa.gz 2007-02-15 11:41 12M
chr23.fa.gz 2007-02-15 11:41 13M
chr26.fa.gz 2007-02-15 11:41 13M
chr28.fa.gz 2007-02-15 11:41 14M
chr24.fa.gz 2007-02-15 11:41 15M
chr22.fa.gz 2007-02-15 11:41 16M
chr21.fa.gz 2007-02-15 11:41 17M
chr19.fa.gz 2007-02-15 11:41 18M
chr20.fa.gz 2007-02-15 11:41 18M
chr11.fa.gz 2007-02-15 11:40 18M
chr18.fa.gz 2007-02-15 11:41 20M
chr5.fa.gz 2007-02-15 11:42 23M
chr9.fa.gz 2007-02-15 11:42 24M
chr10.fa.gz 2007-02-15 11:40 25M
chr17.fa.gz 2007-02-15 11:41 25M
chr6.fa.gz 2007-02-15 11:42 26M
chr7.fa.gz 2007-02-15 11:42 27M
chr8.fa.gz 2007-02-15 11:42 27M
chr16.fa.gz 2007-02-15 11:40 28M
chr15.fa.gz 2007-02-15 11:40 28M
chr14.fa.gz 2007-02-15 11:40 29M
chr4.fa.gz 2007-02-15 11:42 31M
chr2.fa.gz 2007-02-15 11:41 33M
chr3.fa.gz 2007-02-15 11:41 35M
chr1.fa.gz 2007-02-15 11:40 56M
chrUn.fa.gz 2007-02-15 11:42 118M