This directory contains the assembly of the Drosophila mojavensis genome
(droMoj3, Feb. 2006), as well as repeat annotations.

Files included in this directory:

droMoj3.agp.gz - Description of how the assembly was generated from
    fragments.

droMoj3.fa.gz - "Soft-masked" assembly sequence in one file.
    Repeats from RepeatMasker and Tandem Repeats Finder (with period
    of 12 or less) are shown in lower case; non-repeating sequence is
    shown in upper case.

droMoj3.fa.masked.gz - "Hard-masked" assembly sequence in one file.
    Repeats are masked by capital Ns; non-repeating sequence is shown in
    upper case.

droMoj3.fa.out.gz - RepeatMasker .out file.  RepeatMasker was run with the
    -s (sensitive) setting.

droMoj3.trf.bed.gz - Tandem Repeats Finder locations, filtered to keep repeats
    with period less than or equal to 12, and translated into UCSC's BED
    format.

md5sum.txt - checksums of files in this directory


droMoj3.chrom.sizes - Two-column tab-separated text file containing assembly
    sequence names and sizes.

droMoj3.chromAlias.txt - sequence name alias file, one line
    for each sequence name.  First column is sequence name followed by
    tab separated alias names.

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If you plan to download a large file or multiple files from this 
directory, we recommend that you use ftp rather than downloading the 
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then 
go to the directory goldenPath/droMoj3/bigZips. To download multiple 
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)

      Name                    Last modified      Size  Description
      Parent Directory                             -   
      droMoj3.chrom.sizes     2006-09-21 09:21  126K  
      droMoj3.agp.gz          2006-10-12 08:05  197K  
      droMoj3.fa.out.gz       2006-10-12 08:05  8.0M  
      droMoj3.trf.bed.gz      2006-10-12 08:05  1.6M  
      droMoj3.fa.gz           2006-10-12 08:06   54M  
      droMoj3.fa.masked.gz    2006-10-12 08:07   47M  
      md5sum.txt              2006-10-12 08:07  257   
      droMoj3.chromAlias.txt  2020-09-29 10:48  266K