This directory contains the Drosophila pseudoobscura Flybase
Release 1.0 assembly (Nov. 2004).
The annotations are from UCSC, Flybase and collaborators worldwide.
Files are updated nightly. The .txt.gz files contain the
database tables in a tab-delimited format compressed with gzip.
The .sql files contain the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=dp3
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
If you plan to download a large file or multiple files from
this directory, we recommend that you use ftp rather than
downloading the files via our website. To do so, ftp to
hgdownload.cse.ucsc.edu, then go to the directory
goldenPath/dp3/database. To download multiple files,
use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the tables in this directory are freely usable for any
purpose.
Name Last modified Size Description
Parent Directory -
xenoRefSeqAli.txt.gz 2020-08-19 00:44 7.1M
xenoRefSeqAli.sql 2020-08-19 00:44 2.1K
xenoRefGene.txt.gz 2020-08-19 00:44 7.8M
xenoRefGene.sql 2020-08-19 00:44 1.9K
xenoRefFlat.txt.gz 2020-08-19 00:44 7.1M
xenoRefFlat.sql 2020-08-19 00:44 1.7K
xenoMrna.txt.gz 2016-02-21 13:54 89M
xenoMrna.sql 2016-02-21 13:53 2.1K
twinscan.txt.gz 2005-06-24 12:22 622K
twinscan.sql 2013-10-01 12:48 746
trackDb.txt.gz 2023-03-28 13:48 21K
trackDb.sql 2023-03-28 13:48 2.1K
tableList.txt.gz 2024-11-24 03:24 8.0K
tableList.sql 2024-11-24 03:24 1.6K
tableDescriptions.txt.gz 2024-11-23 02:03 4.7K
tableDescriptions.sql 2024-11-23 02:03 1.4K
simpleRepeat.txt.gz 2005-06-24 12:22 1.4M
simpleRepeat.sql 2013-10-01 12:48 1.1K
netDm3.txt.gz 2007-07-14 10:30 7.6M
netDm3.sql 2007-07-14 10:30 2.2K
mrnaOrientInfo.txt.gz 2017-10-22 06:27 2.2K
mrnaOrientInfo.sql 2017-10-22 06:27 1.8K
microsat.txt.gz 2015-08-23 14:22 8.7K
microsat.sql 2015-08-23 14:22 1.5K
history.txt.gz 2005-06-24 12:21 470
history.sql 2013-10-01 12:48 533
hgFindSpec.txt.gz 2023-03-28 13:48 1.0K
hgFindSpec.sql 2023-03-28 13:48 1.8K
grp.txt.gz 2014-03-02 03:40 223
grp.sql 2014-03-02 03:40 1.4K
genscanPep.txt.gz 2005-06-24 12:21 4.7M
genscanPep.sql 2013-10-01 12:48 326
genscan.txt.gz 2005-06-24 12:21 716K
genscan.sql 2013-10-01 12:48 744
genewise.txt.gz 2005-06-24 12:21 546K
genewise.sql 2013-10-01 12:48 746
geneid.txt.gz 2005-09-23 04:49 723K
geneid.sql 2013-10-01 12:48 1.0K
gcPercent.txt.gz 2005-06-24 12:21 40K
gcPercent.sql 2013-10-01 12:48 506
gbLoaded.txt.gz 2020-08-19 00:44 43K
gbLoaded.sql 2020-08-19 00:44 1.6K
gbDelete_tmp.txt.gz 2005-09-27 05:01 180K
gbDelete_tmp.sql 2013-10-01 12:48 322
flyBasePep.txt.gz 2005-06-24 12:20 2.9M
flyBasePep.sql 2013-10-01 12:48 326
flyBaseGene.txt.gz 2005-06-24 12:20 402K
flyBaseGene.sql 2013-10-01 12:48 752
flyBase2004Xref.txt.gz 2005-06-24 12:20 97K
flyBase2004Xref.sql 2013-10-01 12:48 730
fbGenscan.txt.gz 2005-06-24 12:20 868K
fbGenscan.sql 2013-10-01 12:48 1.0K
estOrientInfo.txt.gz 2016-06-05 10:02 362K
estOrientInfo.sql 2016-06-05 10:02 1.8K
chromInfo.txt.gz 2005-06-24 12:20 209
chromInfo.sql 2013-10-01 12:48 392
chrXR_group9_rmsk.txt.gz 2005-06-24 12:20 148K
chrXR_group9_rmsk.sql 2013-10-01 12:48 1.1K
chrXR_group9_mrna.txt.gz 2016-05-15 08:25 250
chrXR_group9_mrna.sql 2016-05-15 08:25 2.1K
chrXR_group9_intronEst.txt.gz 2016-05-15 08:25 55K
chrXR_group9_intronEst.sql 2016-05-15 08:25 2.1K
chrXR_group9_gap.txt.gz 2005-06-24 12:20 4.1K
chrXR_group9_gap.sql 2013-10-01 12:48 716
chrXR_group9_est.txt.gz 2016-06-05 10:02 91K
chrXR_group9_est.sql 2016-06-05 10:02 2.1K
chrXR_group9_chainDm3Link.txt.gz 2007-07-14 10:31 2.1M
chrXR_group9_chainDm3Link.sql 2007-07-14 10:31 1.4K
chrXR_group9_chainDm3.txt.gz 2007-07-14 10:31 199K
chrXR_group9_chainDm3.sql 2007-07-14 10:31 1.7K
chrXR_group8_rmsk.txt.gz 2005-06-24 12:20 198K
chrXR_group8_rmsk.sql 2013-10-01 12:48 1.1K
chrXR_group8_mrna.txt.gz 2016-06-05 10:02 2.0K
chrXR_group8_mrna.sql 2016-06-05 10:02 2.1K
chrXR_group8_intronEst.txt.gz 2016-06-05 10:02 92K
chrXR_group8_intronEst.sql 2016-06-05 10:02 2.1K
chrXR_group8_gap.txt.gz 2005-06-24 12:20 5.2K
chrXR_group8_gap.sql 2013-10-01 12:48 716
chrXR_group8_est.txt.gz 2016-06-05 10:02 144K
chrXR_group8_est.sql 2016-06-05 10:02 2.1K
chrXR_group8_chainDm3Link.txt.gz 2007-07-14 10:31 3.0M
chrXR_group8_chainDm3Link.sql 2007-07-14 10:31 1.4K
chrXR_group8_chainDm3.txt.gz 2007-07-14 10:31 292K
chrXR_group8_chainDm3.sql 2007-07-14 10:31 1.7K
chrXR_group6_rmsk.txt.gz 2005-06-24 12:20 136K
chrXR_group6_rmsk.sql 2013-10-01 12:48 1.1K
chrXR_group6_mrna.txt.gz 2016-09-18 07:51 620
chrXR_group6_mrna.sql 2016-09-18 07:51 2.1K
chrXR_group6_intronEst.txt.gz 2016-05-15 08:25 60K
chrXR_group6_intronEst.sql 2016-05-15 08:25 2.1K
chrXR_group6_gap.txt.gz 2005-06-24 12:20 3.4K
chrXR_group6_gap.sql 2013-10-01 12:48 716
chrXR_group6_est.txt.gz 2016-06-05 10:02 90K
chrXR_group6_est.sql 2016-06-05 10:02 2.1K
chrXR_group6_chainDm3Link.txt.gz 2007-07-14 10:31 2.1M
chrXR_group6_chainDm3Link.sql 2007-07-14 10:31 1.4K
chrXR_group6_chainDm3.txt.gz 2007-07-14 10:31 270K
chrXR_group6_chainDm3.sql 2007-07-14 10:31 1.7K
chrXR_group5_rmsk.txt.gz 2005-06-24 12:19 16K
chrXR_group5_rmsk.sql 2013-10-01 12:48 1.1K
chrXR_group5_mrna.txt.gz 2016-05-15 08:25 42
chrXR_group5_mrna.sql 2016-05-15 08:25 2.1K
chrXR_group5_intronEst.txt.gz 2016-05-15 08:25 8.0K
chrXR_group5_intronEst.sql 2016-05-15 08:25 2.1K
chrXR_group5_gap.txt.gz 2005-06-24 12:19 488
chrXR_group5_gap.sql 2013-10-01 12:48 716
chrXR_group5_est.txt.gz 2016-05-15 08:25 13K
chrXR_group5_est.sql 2016-05-15 08:25 2.1K
chrXR_group5_chainDm3Link.txt.gz 2007-07-14 10:31 246K
chrXR_group5_chainDm3Link.sql 2007-07-14 10:31 1.4K
chrXR_group5_chainDm3.txt.gz 2007-07-14 10:31 19K
chrXR_group5_chainDm3.sql 2007-07-14 10:31 1.7K
chrXR_group3a_rmsk.txt.gz 2005-06-24 12:19 32K
chrXR_group3a_rmsk.sql 2013-10-01 12:48 1.1K
chrXR_group3a_mrna.txt.gz 2016-05-15 08:25 107
chrXR_group3a_mrna.sql 2016-05-15 08:25 2.1K
chrXR_group3a_intronEst.txt.gz 2016-05-15 08:25 30K
chrXR_group3a_intronEst.sql 2016-05-15 08:25 2.1K
chrXR_group3a_gap.txt.gz 2005-06-24 12:19 1.0K
chrXR_group3a_gap.sql 2013-10-01 12:48 718
chrXR_group3a_est.txt.gz 2016-05-15 08:25 44K
chrXR_group3a_est.sql 2016-05-15 08:25 2.1K
chrXR_group3a_chainDm3Link.txt.gz 2007-07-14 10:31 514K
chrXR_group3a_chainDm3Link.sql 2007-07-14 10:31 1.4K
chrXR_group3a_chainDm3.txt.gz 2007-07-14 10:31 52K
chrXR_group3a_chainDm3.sql 2007-07-14 10:31 1.7K
chrXL_group3b_rmsk.txt.gz 2005-06-24 12:19 9.2K
chrXL_group3b_rmsk.sql 2013-10-01 12:48 1.1K
chrXL_group3b_mrna.txt.gz 2016-05-15 08:25 150
chrXL_group3b_mrna.sql 2016-05-15 08:25 2.1K
chrXL_group3b_intronEst.txt.gz 2016-05-15 08:25 1.5K
chrXL_group3b_intronEst.sql 2016-05-15 08:25 2.1K
chrXL_group3b_gap.txt.gz 2005-06-24 12:19 417
chrXL_group3b_gap.sql 2013-10-01 12:48 718
chrXL_group3b_est.txt.gz 2016-05-15 08:25 3.5K
chrXL_group3b_est.sql 2016-05-15 08:25 2.1K
chrXL_group3b_chainDm3Link.txt.gz 2007-07-14 10:31 146K
chrXL_group3b_chainDm3Link.sql 2007-07-14 10:31 1.4K
chrXL_group3b_chainDm3.txt.gz 2007-07-14 10:31 18K
chrXL_group3b_chainDm3.sql 2007-07-14 10:31 1.7K
chrXL_group3a_rmsk.txt.gz 2005-06-24 12:19 50K
chrXL_group3a_rmsk.sql 2013-10-01 12:48 1.1K
chrXL_group3a_mrna.txt.gz 2016-05-15 08:25 155
chrXL_group3a_mrna.sql 2016-05-15 08:25 2.1K
chrXL_group3a_intronEst.txt.gz 2016-05-15 08:25 21K
chrXL_group3a_intronEst.sql 2016-05-15 08:25 2.1K
chrXL_group3a_gap.txt.gz 2005-06-24 12:19 1.9K
chrXL_group3a_gap.sql 2013-10-01 12:48 718
chrXL_group3a_est.txt.gz 2016-06-05 10:02 28K
chrXL_group3a_est.sql 2016-06-05 10:02 2.1K
chrXL_group3a_chainDm3Link.txt.gz 2007-07-14 10:31 859K
chrXL_group3a_chainDm3Link.sql 2007-07-14 10:31 1.4K
chrXL_group3a_chainDm3.txt.gz 2007-07-14 10:31 92K
chrXL_group3a_chainDm3.sql 2007-07-14 10:31 1.7K
chrXL_group1e_rmsk.txt.gz 2005-06-24 12:19 261K
chrXL_group1e_rmsk.sql 2013-10-01 12:48 1.1K
chrXL_group1e_mrna.txt.gz 2016-05-15 08:25 701
chrXL_group1e_mrna.sql 2016-05-15 08:25 2.1K
chrXL_group1e_intronEst.txt.gz 2016-06-05 10:02 122K
chrXL_group1e_intronEst.sql 2016-06-05 10:02 2.1K
chrXL_group1e_gap.txt.gz 2005-06-24 12:19 7.0K
chrXL_group1e_gap.sql 2013-10-01 12:48 718
chrXL_group1e_est.txt.gz 2016-06-05 10:02 189K
chrXL_group1e_est.sql 2016-06-05 10:02 2.1K
chrXL_group1e_chainDm3Link.txt.gz 2007-07-14 10:31 4.0M
chrXL_group1e_chainDm3Link.sql 2007-07-14 10:31 1.4K
chrXL_group1e_chainDm3.txt.gz 2007-07-14 10:31 557K
chrXL_group1e_chainDm3.sql 2007-07-14 10:31 1.7K
chrXL_group1a_rmsk.txt.gz 2005-06-24 12:19 195K
chrXL_group1a_rmsk.sql 2013-10-01 12:48 1.1K
chrXL_group1a_mrna.txt.gz 2016-09-18 07:51 943
chrXL_group1a_mrna.sql 2016-09-18 07:51 2.1K
chrXL_group1a_intronEst.txt.gz 2016-05-15 08:25 89K
chrXL_group1a_intronEst.sql 2016-05-15 08:25 2.1K
chrXL_group1a_gap.txt.gz 2005-06-24 12:19 5.7K
chrXL_group1a_gap.sql 2013-10-01 12:48 718
chrXL_group1a_est.txt.gz 2016-06-05 10:02 138K
chrXL_group1a_est.sql 2016-06-05 10:02 2.1K
chrXL_group1a_chainDm3Link.txt.gz 2007-07-14 10:31 3.1M
chrXL_group1a_chainDm3Link.sql 2007-07-14 10:31 1.4K
chrXL_group1a_chainDm3.txt.gz 2007-07-14 10:31 375K
chrXL_group1a_chainDm3.sql 2007-07-14 10:31 1.7K
chrU_rmsk.txt.gz 2005-06-24 12:19 298K
chrU_rmsk.sql 2013-10-01 12:48 1.0K
chrU_mrna.txt.gz 2016-05-15 08:25 681
chrU_mrna.sql 2016-05-15 08:25 2.1K
chrU_intronEst.txt.gz 2016-06-05 10:02 40K
chrU_intronEst.sql 2016-06-05 10:02 2.1K
chrU_gap.txt.gz 2005-06-24 12:19 14K
chrU_gap.sql 2013-10-01 12:48 700
chrU_est.txt.gz 2016-06-05 10:02 102K
chrU_est.sql 2016-06-05 10:02 2.1K
chrU_chainDm3Link.txt.gz 2007-07-14 10:31 14M
chrU_chainDm3Link.sql 2007-07-14 10:30 1.4K
chrU_chainDm3.txt.gz 2007-07-14 10:30 2.0M
chrU_chainDm3.sql 2007-07-14 10:30 1.6K
chr4_group5_rmsk.txt.gz 2005-06-24 12:19 38K
chr4_group5_rmsk.sql 2013-10-01 12:48 1.1K
chr4_group5_mrna.txt.gz 2016-05-15 08:25 41
chr4_group5_mrna.sql 2016-05-15 08:25 2.1K
chr4_group5_intronEst.txt.gz 2016-05-15 08:25 23K
chr4_group5_intronEst.sql 2016-05-15 08:25 2.1K
chr4_group5_gap.txt.gz 2005-06-24 12:19 861
chr4_group5_gap.sql 2013-10-01 12:48 714
chr4_group5_est.txt.gz 2016-05-15 08:25 39K
chr4_group5_est.sql 2016-05-15 08:25 2.1K
chr4_group5_chainDm3Link.txt.gz 2007-07-14 10:30 713K
chr4_group5_chainDm3Link.sql 2007-07-14 10:30 1.4K
chr4_group5_chainDm3.txt.gz 2007-07-14 10:30 77K
chr4_group5_chainDm3.sql 2007-07-14 10:30 1.7K
chr4_group4_rmsk.txt.gz 2005-06-24 12:19 92K
chr4_group4_rmsk.sql 2013-10-01 12:48 1.1K
chr4_group4_mrna.txt.gz 2016-05-15 08:25 221
chr4_group4_mrna.sql 2016-05-15 08:25 2.1K
chr4_group4_intronEst.txt.gz 2016-05-15 08:25 66K
chr4_group4_intronEst.sql 2016-05-15 08:25 2.1K
chr4_group4_gap.txt.gz 2005-06-24 12:19 3.3K
chr4_group4_gap.sql 2013-10-01 12:48 714
chr4_group4_est.txt.gz 2016-06-05 10:02 93K
chr4_group4_est.sql 2016-06-05 10:02 2.1K
chr4_group4_chainDm3Link.txt.gz 2007-07-14 10:30 1.9M
chr4_group4_chainDm3Link.sql 2007-07-14 10:30 1.4K
chr4_group4_chainDm3.txt.gz 2007-07-14 10:30 176K
chr4_group4_chainDm3.sql 2007-07-14 10:30 1.7K
chr4_group3_rmsk.txt.gz 2005-06-24 12:19 179K
chr4_group3_rmsk.sql 2013-10-01 12:48 1.1K
chr4_group3_mrna.txt.gz 2016-09-18 07:51 707
chr4_group3_mrna.sql 2016-09-18 07:51 2.1K
chr4_group3_intronEst.txt.gz 2016-06-05 10:02 98K
chr4_group3_intronEst.sql 2016-06-05 10:02 2.1K
chr4_group3_gap.txt.gz 2005-06-24 12:19 4.6K
chr4_group3_gap.sql 2013-10-01 12:48 714
chr4_group3_est.txt.gz 2016-06-05 10:02 156K
chr4_group3_est.sql 2016-06-05 10:02 2.1K
chr4_group3_chainDm3Link.txt.gz 2007-07-14 10:30 4.1M
chr4_group3_chainDm3Link.sql 2007-07-14 10:30 1.4K
chr4_group3_chainDm3.txt.gz 2007-07-14 10:30 609K
chr4_group3_chainDm3.sql 2007-07-14 10:30 1.7K
chr4_group2_rmsk.txt.gz 2005-06-24 12:19 19K
chr4_group2_rmsk.sql 2013-10-01 12:48 1.1K
chr4_group2_mrna.txt.gz 2016-05-15 08:25 41
chr4_group2_mrna.sql 2016-05-15 08:25 2.1K
chr4_group2_intronEst.txt.gz 2016-05-15 08:25 7.4K
chr4_group2_intronEst.sql 2016-05-15 08:25 2.1K
chr4_group2_gap.txt.gz 2005-06-24 12:19 805
chr4_group2_gap.sql 2013-10-01 12:48 714
chr4_group2_est.txt.gz 2016-06-05 10:02 15K
chr4_group2_est.sql 2016-06-05 10:02 2.1K
chr4_group2_chainDm3Link.txt.gz 2007-07-14 10:30 514K
chr4_group2_chainDm3Link.sql 2007-07-14 10:30 1.4K
chr4_group2_chainDm3.txt.gz 2007-07-14 10:30 63K
chr4_group2_chainDm3.sql 2007-07-14 10:30 1.7K
chr4_group1_rmsk.txt.gz 2005-06-24 12:19 89K
chr4_group1_rmsk.sql 2013-10-01 12:48 1.1K
chr4_group1_mrna.txt.gz 2016-05-15 08:25 215
chr4_group1_mrna.sql 2016-05-15 08:25 2.1K
chr4_group1_intronEst.txt.gz 2016-06-05 10:02 36K
chr4_group1_intronEst.sql 2016-06-05 10:02 2.1K
chr4_group1_gap.txt.gz 2005-06-24 12:19 2.4K
chr4_group1_gap.sql 2013-10-01 12:48 714
chr4_group1_est.txt.gz 2016-06-05 10:02 59K
chr4_group1_est.sql 2016-06-05 10:02 2.1K
chr4_group1_chainDm3Link.txt.gz 2007-07-14 10:30 1.4M
chr4_group1_chainDm3Link.sql 2007-07-14 10:30 1.4K
chr4_group1_chainDm3.txt.gz 2007-07-14 10:30 119K
chr4_group1_chainDm3.sql 2007-07-14 10:30 1.7K
chr3_rmsk.txt.gz 2005-06-24 12:19 258K
chr3_rmsk.sql 2013-10-01 12:48 1.0K
chr3_mrna.txt.gz 2017-10-22 06:27 816
chr3_mrna.sql 2017-10-22 06:27 2.1K
chr3_intronEst.txt.gz 2016-06-05 10:02 245K
chr3_intronEst.sql 2016-06-05 10:02 2.1K
chr3_gap.txt.gz 2005-06-24 12:19 6.9K
chr3_gap.sql 2013-10-01 12:48 700
chr3_est.txt.gz 2016-06-05 10:02 383K
chr3_est.sql 2016-06-05 10:02 2.1K
chr3_chainDm3Link.txt.gz 2007-07-14 10:30 6.6M
chr3_chainDm3Link.sql 2007-07-14 10:30 1.4K
chr3_chainDm3.txt.gz 2007-07-14 10:30 606K
chr3_chainDm3.sql 2007-07-14 10:30 1.6K
chr2_rmsk.txt.gz 2005-06-24 12:19 472K
chr2_rmsk.sql 2013-10-01 12:48 1.0K
chr2_mrna.txt.gz 2016-09-18 07:51 1.4K
chr2_mrna.sql 2016-09-18 07:51 2.1K
chr2_intronEst.txt.gz 2016-06-05 10:02 370K
chr2_intronEst.sql 2016-06-05 10:02 2.1K
chr2_gap.txt.gz 2005-06-24 12:19 11K
chr2_gap.sql 2013-10-01 12:48 700
chr2_est.txt.gz 2016-06-05 10:02 566K
chr2_est.sql 2016-06-05 10:02 2.1K
chr2_chainDm3Link.txt.gz 2007-07-14 10:30 10M
chr2_chainDm3Link.sql 2007-07-14 10:29 1.4K
chr2_chainDm3.txt.gz 2007-07-14 10:29 853K
chr2_chainDm3.sql 2007-07-14 10:29 1.6K
blastDm2FB.txt.gz 2005-07-28 05:23 1.4M
blastDm2FB.sql 2013-10-01 12:48 1.3K
bigFiles.txt.gz 2024-11-24 03:24 33
bigFiles.sql 2024-11-24 03:24 1.4K
augustusGene.txt.gz 2015-07-26 12:19 770K
augustusGene.sql 2015-07-26 12:19 1.9K
all_mrna.txt.gz 2017-10-22 06:27 8.1K
all_mrna.sql 2017-10-22 06:27 2.1K
all_est.txt.gz 2016-06-05 10:02 2.1M
all_est.sql 2016-06-05 10:02 2.1K