This directory contains the Drosophila pseudoobscura Flybase
Release 1.0 assembly (Nov. 2004).
The annotations are from UCSC, Flybase and collaborators worldwide.
Files are updated nightly. The .txt.gz files contain the
database tables in a tab-delimited format compressed with gzip.
The .sql files contain the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=dp3
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
If you plan to download a large file or multiple files from
this directory, we recommend that you use ftp rather than
downloading the files via our website. To do so, ftp to
hgdownload.cse.ucsc.edu, then go to the directory
goldenPath/dp3/database. To download multiple files,
use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the tables in this directory are freely usable for any
purpose.
Name Last modified Size Description
Parent Directory -
all_est.sql 2016-06-05 10:02 2.1K
all_est.txt.gz 2016-06-05 10:02 2.1M
all_mrna.sql 2017-10-22 06:27 2.1K
all_mrna.txt.gz 2017-10-22 06:27 8.1K
augustusGene.sql 2015-07-26 12:19 1.9K
augustusGene.txt.gz 2015-07-26 12:19 770K
bigFiles.sql 2024-10-27 03:38 1.4K
bigFiles.txt.gz 2024-10-27 03:38 33
blastDm2FB.sql 2013-10-01 12:48 1.3K
blastDm2FB.txt.gz 2005-07-28 05:23 1.4M
chr2_chainDm3.sql 2007-07-14 10:29 1.6K
chr2_chainDm3.txt.gz 2007-07-14 10:29 853K
chr2_chainDm3Link.sql 2007-07-14 10:29 1.4K
chr2_chainDm3Link.txt.gz 2007-07-14 10:30 10M
chr2_est.sql 2016-06-05 10:02 2.1K
chr2_est.txt.gz 2016-06-05 10:02 566K
chr2_gap.sql 2013-10-01 12:48 700
chr2_gap.txt.gz 2005-06-24 12:19 11K
chr2_intronEst.sql 2016-06-05 10:02 2.1K
chr2_intronEst.txt.gz 2016-06-05 10:02 370K
chr2_mrna.sql 2016-09-18 07:51 2.1K
chr2_mrna.txt.gz 2016-09-18 07:51 1.4K
chr2_rmsk.sql 2013-10-01 12:48 1.0K
chr2_rmsk.txt.gz 2005-06-24 12:19 472K
chr3_chainDm3.sql 2007-07-14 10:30 1.6K
chr3_chainDm3.txt.gz 2007-07-14 10:30 606K
chr3_chainDm3Link.sql 2007-07-14 10:30 1.4K
chr3_chainDm3Link.txt.gz 2007-07-14 10:30 6.6M
chr3_est.sql 2016-06-05 10:02 2.1K
chr3_est.txt.gz 2016-06-05 10:02 383K
chr3_gap.sql 2013-10-01 12:48 700
chr3_gap.txt.gz 2005-06-24 12:19 6.9K
chr3_intronEst.sql 2016-06-05 10:02 2.1K
chr3_intronEst.txt.gz 2016-06-05 10:02 245K
chr3_mrna.sql 2017-10-22 06:27 2.1K
chr3_mrna.txt.gz 2017-10-22 06:27 816
chr3_rmsk.sql 2013-10-01 12:48 1.0K
chr3_rmsk.txt.gz 2005-06-24 12:19 258K
chr4_group1_chainDm3.sql 2007-07-14 10:30 1.7K
chr4_group1_chainDm3.txt.gz 2007-07-14 10:30 119K
chr4_group1_chainDm3Link.sql 2007-07-14 10:30 1.4K
chr4_group1_chainDm3Link.txt.gz 2007-07-14 10:30 1.4M
chr4_group1_est.sql 2016-06-05 10:02 2.1K
chr4_group1_est.txt.gz 2016-06-05 10:02 59K
chr4_group1_gap.sql 2013-10-01 12:48 714
chr4_group1_gap.txt.gz 2005-06-24 12:19 2.4K
chr4_group1_intronEst.sql 2016-06-05 10:02 2.1K
chr4_group1_intronEst.txt.gz 2016-06-05 10:02 36K
chr4_group1_mrna.sql 2016-05-15 08:25 2.1K
chr4_group1_mrna.txt.gz 2016-05-15 08:25 215
chr4_group1_rmsk.sql 2013-10-01 12:48 1.1K
chr4_group1_rmsk.txt.gz 2005-06-24 12:19 89K
chr4_group2_chainDm3.sql 2007-07-14 10:30 1.7K
chr4_group2_chainDm3.txt.gz 2007-07-14 10:30 63K
chr4_group2_chainDm3Link.sql 2007-07-14 10:30 1.4K
chr4_group2_chainDm3Link.txt.gz 2007-07-14 10:30 514K
chr4_group2_est.sql 2016-06-05 10:02 2.1K
chr4_group2_est.txt.gz 2016-06-05 10:02 15K
chr4_group2_gap.sql 2013-10-01 12:48 714
chr4_group2_gap.txt.gz 2005-06-24 12:19 805
chr4_group2_intronEst.sql 2016-05-15 08:25 2.1K
chr4_group2_intronEst.txt.gz 2016-05-15 08:25 7.4K
chr4_group2_mrna.sql 2016-05-15 08:25 2.1K
chr4_group2_mrna.txt.gz 2016-05-15 08:25 41
chr4_group2_rmsk.sql 2013-10-01 12:48 1.1K
chr4_group2_rmsk.txt.gz 2005-06-24 12:19 19K
chr4_group3_chainDm3.sql 2007-07-14 10:30 1.7K
chr4_group3_chainDm3.txt.gz 2007-07-14 10:30 609K
chr4_group3_chainDm3Link.sql 2007-07-14 10:30 1.4K
chr4_group3_chainDm3Link.txt.gz 2007-07-14 10:30 4.1M
chr4_group3_est.sql 2016-06-05 10:02 2.1K
chr4_group3_est.txt.gz 2016-06-05 10:02 156K
chr4_group3_gap.sql 2013-10-01 12:48 714
chr4_group3_gap.txt.gz 2005-06-24 12:19 4.6K
chr4_group3_intronEst.sql 2016-06-05 10:02 2.1K
chr4_group3_intronEst.txt.gz 2016-06-05 10:02 98K
chr4_group3_mrna.sql 2016-09-18 07:51 2.1K
chr4_group3_mrna.txt.gz 2016-09-18 07:51 707
chr4_group3_rmsk.sql 2013-10-01 12:48 1.1K
chr4_group3_rmsk.txt.gz 2005-06-24 12:19 179K
chr4_group4_chainDm3.sql 2007-07-14 10:30 1.7K
chr4_group4_chainDm3.txt.gz 2007-07-14 10:30 176K
chr4_group4_chainDm3Link.sql 2007-07-14 10:30 1.4K
chr4_group4_chainDm3Link.txt.gz 2007-07-14 10:30 1.9M
chr4_group4_est.sql 2016-06-05 10:02 2.1K
chr4_group4_est.txt.gz 2016-06-05 10:02 93K
chr4_group4_gap.sql 2013-10-01 12:48 714
chr4_group4_gap.txt.gz 2005-06-24 12:19 3.3K
chr4_group4_intronEst.sql 2016-05-15 08:25 2.1K
chr4_group4_intronEst.txt.gz 2016-05-15 08:25 66K
chr4_group4_mrna.sql 2016-05-15 08:25 2.1K
chr4_group4_mrna.txt.gz 2016-05-15 08:25 221
chr4_group4_rmsk.sql 2013-10-01 12:48 1.1K
chr4_group4_rmsk.txt.gz 2005-06-24 12:19 92K
chr4_group5_chainDm3.sql 2007-07-14 10:30 1.7K
chr4_group5_chainDm3.txt.gz 2007-07-14 10:30 77K
chr4_group5_chainDm3Link.sql 2007-07-14 10:30 1.4K
chr4_group5_chainDm3Link.txt.gz 2007-07-14 10:30 713K
chr4_group5_est.sql 2016-05-15 08:25 2.1K
chr4_group5_est.txt.gz 2016-05-15 08:25 39K
chr4_group5_gap.sql 2013-10-01 12:48 714
chr4_group5_gap.txt.gz 2005-06-24 12:19 861
chr4_group5_intronEst.sql 2016-05-15 08:25 2.1K
chr4_group5_intronEst.txt.gz 2016-05-15 08:25 23K
chr4_group5_mrna.sql 2016-05-15 08:25 2.1K
chr4_group5_mrna.txt.gz 2016-05-15 08:25 41
chr4_group5_rmsk.sql 2013-10-01 12:48 1.1K
chr4_group5_rmsk.txt.gz 2005-06-24 12:19 38K
chrU_chainDm3.sql 2007-07-14 10:30 1.6K
chrU_chainDm3.txt.gz 2007-07-14 10:30 2.0M
chrU_chainDm3Link.sql 2007-07-14 10:30 1.4K
chrU_chainDm3Link.txt.gz 2007-07-14 10:31 14M
chrU_est.sql 2016-06-05 10:02 2.1K
chrU_est.txt.gz 2016-06-05 10:02 102K
chrU_gap.sql 2013-10-01 12:48 700
chrU_gap.txt.gz 2005-06-24 12:19 14K
chrU_intronEst.sql 2016-06-05 10:02 2.1K
chrU_intronEst.txt.gz 2016-06-05 10:02 40K
chrU_mrna.sql 2016-05-15 08:25 2.1K
chrU_mrna.txt.gz 2016-05-15 08:25 681
chrU_rmsk.sql 2013-10-01 12:48 1.0K
chrU_rmsk.txt.gz 2005-06-24 12:19 298K
chrXL_group1a_chainDm3.sql 2007-07-14 10:31 1.7K
chrXL_group1a_chainDm3.txt.gz 2007-07-14 10:31 375K
chrXL_group1a_chainDm3Link.sql 2007-07-14 10:31 1.4K
chrXL_group1a_chainDm3Link.txt.gz 2007-07-14 10:31 3.1M
chrXL_group1a_est.sql 2016-06-05 10:02 2.1K
chrXL_group1a_est.txt.gz 2016-06-05 10:02 138K
chrXL_group1a_gap.sql 2013-10-01 12:48 718
chrXL_group1a_gap.txt.gz 2005-06-24 12:19 5.7K
chrXL_group1a_intronEst.sql 2016-05-15 08:25 2.1K
chrXL_group1a_intronEst.txt.gz 2016-05-15 08:25 89K
chrXL_group1a_mrna.sql 2016-09-18 07:51 2.1K
chrXL_group1a_mrna.txt.gz 2016-09-18 07:51 943
chrXL_group1a_rmsk.sql 2013-10-01 12:48 1.1K
chrXL_group1a_rmsk.txt.gz 2005-06-24 12:19 195K
chrXL_group1e_chainDm3.sql 2007-07-14 10:31 1.7K
chrXL_group1e_chainDm3.txt.gz 2007-07-14 10:31 557K
chrXL_group1e_chainDm3Link.sql 2007-07-14 10:31 1.4K
chrXL_group1e_chainDm3Link.txt.gz 2007-07-14 10:31 4.0M
chrXL_group1e_est.sql 2016-06-05 10:02 2.1K
chrXL_group1e_est.txt.gz 2016-06-05 10:02 189K
chrXL_group1e_gap.sql 2013-10-01 12:48 718
chrXL_group1e_gap.txt.gz 2005-06-24 12:19 7.0K
chrXL_group1e_intronEst.sql 2016-06-05 10:02 2.1K
chrXL_group1e_intronEst.txt.gz 2016-06-05 10:02 122K
chrXL_group1e_mrna.sql 2016-05-15 08:25 2.1K
chrXL_group1e_mrna.txt.gz 2016-05-15 08:25 701
chrXL_group1e_rmsk.sql 2013-10-01 12:48 1.1K
chrXL_group1e_rmsk.txt.gz 2005-06-24 12:19 261K
chrXL_group3a_chainDm3.sql 2007-07-14 10:31 1.7K
chrXL_group3a_chainDm3.txt.gz 2007-07-14 10:31 92K
chrXL_group3a_chainDm3Link.sql 2007-07-14 10:31 1.4K
chrXL_group3a_chainDm3Link.txt.gz 2007-07-14 10:31 859K
chrXL_group3a_est.sql 2016-06-05 10:02 2.1K
chrXL_group3a_est.txt.gz 2016-06-05 10:02 28K
chrXL_group3a_gap.sql 2013-10-01 12:48 718
chrXL_group3a_gap.txt.gz 2005-06-24 12:19 1.9K
chrXL_group3a_intronEst.sql 2016-05-15 08:25 2.1K
chrXL_group3a_intronEst.txt.gz 2016-05-15 08:25 21K
chrXL_group3a_mrna.sql 2016-05-15 08:25 2.1K
chrXL_group3a_mrna.txt.gz 2016-05-15 08:25 155
chrXL_group3a_rmsk.sql 2013-10-01 12:48 1.1K
chrXL_group3a_rmsk.txt.gz 2005-06-24 12:19 50K
chrXL_group3b_chainDm3.sql 2007-07-14 10:31 1.7K
chrXL_group3b_chainDm3.txt.gz 2007-07-14 10:31 18K
chrXL_group3b_chainDm3Link.sql 2007-07-14 10:31 1.4K
chrXL_group3b_chainDm3Link.txt.gz 2007-07-14 10:31 146K
chrXL_group3b_est.sql 2016-05-15 08:25 2.1K
chrXL_group3b_est.txt.gz 2016-05-15 08:25 3.5K
chrXL_group3b_gap.sql 2013-10-01 12:48 718
chrXL_group3b_gap.txt.gz 2005-06-24 12:19 417
chrXL_group3b_intronEst.sql 2016-05-15 08:25 2.1K
chrXL_group3b_intronEst.txt.gz 2016-05-15 08:25 1.5K
chrXL_group3b_mrna.sql 2016-05-15 08:25 2.1K
chrXL_group3b_mrna.txt.gz 2016-05-15 08:25 150
chrXL_group3b_rmsk.sql 2013-10-01 12:48 1.1K
chrXL_group3b_rmsk.txt.gz 2005-06-24 12:19 9.2K
chrXR_group3a_chainDm3.sql 2007-07-14 10:31 1.7K
chrXR_group3a_chainDm3.txt.gz 2007-07-14 10:31 52K
chrXR_group3a_chainDm3Link.sql 2007-07-14 10:31 1.4K
chrXR_group3a_chainDm3Link.txt.gz 2007-07-14 10:31 514K
chrXR_group3a_est.sql 2016-05-15 08:25 2.1K
chrXR_group3a_est.txt.gz 2016-05-15 08:25 44K
chrXR_group3a_gap.sql 2013-10-01 12:48 718
chrXR_group3a_gap.txt.gz 2005-06-24 12:19 1.0K
chrXR_group3a_intronEst.sql 2016-05-15 08:25 2.1K
chrXR_group3a_intronEst.txt.gz 2016-05-15 08:25 30K
chrXR_group3a_mrna.sql 2016-05-15 08:25 2.1K
chrXR_group3a_mrna.txt.gz 2016-05-15 08:25 107
chrXR_group3a_rmsk.sql 2013-10-01 12:48 1.1K
chrXR_group3a_rmsk.txt.gz 2005-06-24 12:19 32K
chrXR_group5_chainDm3.sql 2007-07-14 10:31 1.7K
chrXR_group5_chainDm3.txt.gz 2007-07-14 10:31 19K
chrXR_group5_chainDm3Link.sql 2007-07-14 10:31 1.4K
chrXR_group5_chainDm3Link.txt.gz 2007-07-14 10:31 246K
chrXR_group5_est.sql 2016-05-15 08:25 2.1K
chrXR_group5_est.txt.gz 2016-05-15 08:25 13K
chrXR_group5_gap.sql 2013-10-01 12:48 716
chrXR_group5_gap.txt.gz 2005-06-24 12:19 488
chrXR_group5_intronEst.sql 2016-05-15 08:25 2.1K
chrXR_group5_intronEst.txt.gz 2016-05-15 08:25 8.0K
chrXR_group5_mrna.sql 2016-05-15 08:25 2.1K
chrXR_group5_mrna.txt.gz 2016-05-15 08:25 42
chrXR_group5_rmsk.sql 2013-10-01 12:48 1.1K
chrXR_group5_rmsk.txt.gz 2005-06-24 12:19 16K
chrXR_group6_chainDm3.sql 2007-07-14 10:31 1.7K
chrXR_group6_chainDm3.txt.gz 2007-07-14 10:31 270K
chrXR_group6_chainDm3Link.sql 2007-07-14 10:31 1.4K
chrXR_group6_chainDm3Link.txt.gz 2007-07-14 10:31 2.1M
chrXR_group6_est.sql 2016-06-05 10:02 2.1K
chrXR_group6_est.txt.gz 2016-06-05 10:02 90K
chrXR_group6_gap.sql 2013-10-01 12:48 716
chrXR_group6_gap.txt.gz 2005-06-24 12:20 3.4K
chrXR_group6_intronEst.sql 2016-05-15 08:25 2.1K
chrXR_group6_intronEst.txt.gz 2016-05-15 08:25 60K
chrXR_group6_mrna.sql 2016-09-18 07:51 2.1K
chrXR_group6_mrna.txt.gz 2016-09-18 07:51 620
chrXR_group6_rmsk.sql 2013-10-01 12:48 1.1K
chrXR_group6_rmsk.txt.gz 2005-06-24 12:20 136K
chrXR_group8_chainDm3.sql 2007-07-14 10:31 1.7K
chrXR_group8_chainDm3.txt.gz 2007-07-14 10:31 292K
chrXR_group8_chainDm3Link.sql 2007-07-14 10:31 1.4K
chrXR_group8_chainDm3Link.txt.gz 2007-07-14 10:31 3.0M
chrXR_group8_est.sql 2016-06-05 10:02 2.1K
chrXR_group8_est.txt.gz 2016-06-05 10:02 144K
chrXR_group8_gap.sql 2013-10-01 12:48 716
chrXR_group8_gap.txt.gz 2005-06-24 12:20 5.2K
chrXR_group8_intronEst.sql 2016-06-05 10:02 2.1K
chrXR_group8_intronEst.txt.gz 2016-06-05 10:02 92K
chrXR_group8_mrna.sql 2016-06-05 10:02 2.1K
chrXR_group8_mrna.txt.gz 2016-06-05 10:02 2.0K
chrXR_group8_rmsk.sql 2013-10-01 12:48 1.1K
chrXR_group8_rmsk.txt.gz 2005-06-24 12:20 198K
chrXR_group9_chainDm3.sql 2007-07-14 10:31 1.7K
chrXR_group9_chainDm3.txt.gz 2007-07-14 10:31 199K
chrXR_group9_chainDm3Link.sql 2007-07-14 10:31 1.4K
chrXR_group9_chainDm3Link.txt.gz 2007-07-14 10:31 2.1M
chrXR_group9_est.sql 2016-06-05 10:02 2.1K
chrXR_group9_est.txt.gz 2016-06-05 10:02 91K
chrXR_group9_gap.sql 2013-10-01 12:48 716
chrXR_group9_gap.txt.gz 2005-06-24 12:20 4.1K
chrXR_group9_intronEst.sql 2016-05-15 08:25 2.1K
chrXR_group9_intronEst.txt.gz 2016-05-15 08:25 55K
chrXR_group9_mrna.sql 2016-05-15 08:25 2.1K
chrXR_group9_mrna.txt.gz 2016-05-15 08:25 250
chrXR_group9_rmsk.sql 2013-10-01 12:48 1.1K
chrXR_group9_rmsk.txt.gz 2005-06-24 12:20 148K
chromInfo.sql 2013-10-01 12:48 392
chromInfo.txt.gz 2005-06-24 12:20 209
estOrientInfo.sql 2016-06-05 10:02 1.8K
estOrientInfo.txt.gz 2016-06-05 10:02 362K
fbGenscan.sql 2013-10-01 12:48 1.0K
fbGenscan.txt.gz 2005-06-24 12:20 868K
flyBase2004Xref.sql 2013-10-01 12:48 730
flyBase2004Xref.txt.gz 2005-06-24 12:20 97K
flyBaseGene.sql 2013-10-01 12:48 752
flyBaseGene.txt.gz 2005-06-24 12:20 402K
flyBasePep.sql 2013-10-01 12:48 326
flyBasePep.txt.gz 2005-06-24 12:20 2.9M
gbDelete_tmp.sql 2013-10-01 12:48 322
gbDelete_tmp.txt.gz 2005-09-27 05:01 180K
gbLoaded.sql 2020-08-19 00:44 1.6K
gbLoaded.txt.gz 2020-08-19 00:44 43K
gcPercent.sql 2013-10-01 12:48 506
gcPercent.txt.gz 2005-06-24 12:21 40K
geneid.sql 2013-10-01 12:48 1.0K
geneid.txt.gz 2005-09-23 04:49 723K
genewise.sql 2013-10-01 12:48 746
genewise.txt.gz 2005-06-24 12:21 546K
genscan.sql 2013-10-01 12:48 744
genscan.txt.gz 2005-06-24 12:21 716K
genscanPep.sql 2013-10-01 12:48 326
genscanPep.txt.gz 2005-06-24 12:21 4.7M
grp.sql 2014-03-02 03:40 1.4K
grp.txt.gz 2014-03-02 03:40 223
hgFindSpec.sql 2023-03-28 13:48 1.8K
hgFindSpec.txt.gz 2023-03-28 13:48 1.0K
history.sql 2013-10-01 12:48 533
history.txt.gz 2005-06-24 12:21 470
microsat.sql 2015-08-23 14:22 1.5K
microsat.txt.gz 2015-08-23 14:22 8.7K
mrnaOrientInfo.sql 2017-10-22 06:27 1.8K
mrnaOrientInfo.txt.gz 2017-10-22 06:27 2.2K
netDm3.sql 2007-07-14 10:30 2.2K
netDm3.txt.gz 2007-07-14 10:30 7.6M
simpleRepeat.sql 2013-10-01 12:48 1.1K
simpleRepeat.txt.gz 2005-06-24 12:22 1.4M
tableDescriptions.sql 2024-10-26 02:03 1.4K
tableDescriptions.txt.gz 2024-10-26 02:03 4.7K
tableList.sql 2024-10-27 03:38 1.6K
tableList.txt.gz 2024-10-27 03:38 8.0K
trackDb.sql 2023-03-28 13:48 2.1K
trackDb.txt.gz 2023-03-28 13:48 21K
twinscan.sql 2013-10-01 12:48 746
twinscan.txt.gz 2005-06-24 12:22 622K
xenoMrna.sql 2016-02-21 13:53 2.1K
xenoMrna.txt.gz 2016-02-21 13:54 89M
xenoRefFlat.sql 2020-08-19 00:44 1.7K
xenoRefFlat.txt.gz 2020-08-19 00:44 7.1M
xenoRefGene.sql 2020-08-19 00:44 1.9K
xenoRefGene.txt.gz 2020-08-19 00:44 7.8M
xenoRefSeqAli.sql 2020-08-19 00:44 2.1K
xenoRefSeqAli.txt.gz 2020-08-19 00:44 7.1M