This directory contains a dump of the UCSC genome annotation
database for the Dec. 2002 v.1.0 assembly (UCSC version ci1)
of the C. intestinalis genome from the US DOE Joint Genome
Institute (JGI).
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=ci1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/ci1/database. To download multiple files,
use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the annotations in this directory are freely available for public use.
To view restrictions on the use of the v1.0 data, see the JGI data
release policy at http://genome.jgi-psf.org/ciona4/ciona4.download.html.
Name Last modified Size Description
Parent Directory -
xenoRefSeqAli.txt.gz 2020-08-21 06:59 11M
xenoRefSeqAli.sql 2020-08-21 06:59 2.4K
xenoRefGene.txt.gz 2020-08-21 06:59 7.8M
xenoRefGene.sql 2020-08-21 06:59 1.8K
xenoRefFlat.txt.gz 2020-08-21 06:59 9.1M
xenoRefFlat.sql 2020-08-21 06:59 1.9K
xenoMrna.txt.gz 2020-08-21 06:44 111M
xenoMrna.sql 2020-08-21 06:44 2.4K
trackDb.txt.gz 2023-03-28 13:47 10K
trackDb.sql 2023-03-28 13:47 2.1K
tableList.txt.gz 2024-11-17 03:31 2.3K
tableList.sql 2024-11-17 03:31 1.6K
tableDescriptions.txt.gz 2024-11-16 02:03 4.4K
tableDescriptions.sql 2024-11-16 02:03 1.4K
snapGene.txt.gz 2004-07-15 15:44 2.0M
snapGene.sql 2013-10-01 12:48 1.0K
simpleRepeat.txt.gz 2004-07-15 15:44 790K
simpleRepeat.sql 2013-10-01 12:48 1.1K
seq.txt.gz 2004-07-15 15:44 490K
seq.sql 2013-10-01 12:48 586
rmsk.txt.gz 2004-07-15 15:44 3.2M
rmsk.sql 2013-10-01 12:48 1.0K
refSeqAli.txt.gz 2019-07-28 04:38 95K
refSeqAli.sql 2019-07-28 04:38 2.4K
refGene.txt.gz 2020-08-21 06:44 72K
refGene.sql 2020-08-21 06:44 1.8K
refFlat.txt.gz 2020-08-21 06:44 78K
refFlat.sql 2020-08-21 06:44 1.9K
mrnaOrientInfo.txt.gz 2020-08-21 06:44 139K
mrnaOrientInfo.sql 2020-08-21 06:44 1.9K
microsat.txt.gz 2015-08-23 12:42 1.6K
microsat.sql 2015-08-23 12:42 1.5K
jgiPep.txt.gz 2004-07-15 15:43 3.5M
jgiPep.sql 2013-10-01 12:48 318
jgiGene.txt.gz 2004-07-15 15:42 1.0M
jgiGene.sql 2013-10-01 12:48 1.0K
intronEst.txt.gz 2016-06-05 09:29 27M
intronEst.sql 2016-06-05 09:29 2.4K
history.txt.gz 2004-07-15 15:42 934
history.sql 2013-10-01 12:48 533
hgFindSpec.txt.gz 2023-03-28 13:47 699
hgFindSpec.sql 2023-03-28 13:47 1.8K
grp.txt.gz 2014-03-02 03:40 223
grp.sql 2014-03-02 03:40 1.4K
gc5Base.txt.gz 2004-07-15 15:42 607K
gc5Base.sql 2013-10-01 12:48 887
gbLoaded.txt.gz 2020-08-21 06:59 224K
gbLoaded.sql 2020-08-21 06:59 1.7K
gbDelete_tmp.txt.gz 2005-09-27 05:01 180K
gbDelete_tmp.sql 2013-10-01 12:48 322
gap.txt.gz 2004-07-15 15:41 61K
gap.sql 2013-10-01 12:48 704
extFile.txt.gz 2004-07-15 15:41 115
extFile.sql 2013-10-01 12:48 441
estOrientInfo.txt.gz 2016-06-05 09:30 12M
estOrientInfo.sql 2016-06-05 09:30 1.9K
chromInfo.txt.gz 2004-07-15 15:40 21K
chromInfo.sql 2013-10-01 12:48 392
chromAlias.txt.gz 2016-09-15 17:56 12K
chromAlias.sql 2016-09-15 17:56 1.4K
blatCioSav1.txt.gz 2004-07-15 15:40 9.2M
blatCioSav1.sql 2013-10-01 12:48 1.4K
blastHg16KG.txt.gz 2004-09-28 10:06 2.0M
blastHg16KG.sql 2013-10-01 12:48 1.3K
bigFiles.txt.gz 2024-11-17 03:31 33
bigFiles.sql 2024-11-17 03:31 1.4K
all_mrna.txt.gz 2020-08-21 06:44 675K
all_mrna.sql 2020-08-21 06:44 2.4K
all_est.txt.gz 2016-06-05 09:29 42M
all_est.sql 2016-06-05 09:29 2.4K