This directory contains a dump of the UCSC genome annotation
database for the Dec. 2002 v.1.0 assembly (UCSC version ci1)
of the C. intestinalis genome from the US DOE Joint Genome
Institute (JGI).
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=ci1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/ci1/database. To download multiple files,
use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the annotations in this directory are freely available for public use.
To view restrictions on the use of the v1.0 data, see the JGI data
release policy at http://genome.jgi-psf.org/ciona4/ciona4.download.html.
Name Last modified Size Description
Parent Directory -
blatCioSav1.txt.gz 2004-07-15 15:40 9.2M
chromInfo.txt.gz 2004-07-15 15:40 21K
extFile.txt.gz 2004-07-15 15:41 115
gap.txt.gz 2004-07-15 15:41 61K
gc5Base.txt.gz 2004-07-15 15:42 607K
history.txt.gz 2004-07-15 15:42 934
jgiGene.txt.gz 2004-07-15 15:42 1.0M
jgiPep.txt.gz 2004-07-15 15:43 3.5M
rmsk.txt.gz 2004-07-15 15:44 3.2M
seq.txt.gz 2004-07-15 15:44 490K
simpleRepeat.txt.gz 2004-07-15 15:44 790K
snapGene.txt.gz 2004-07-15 15:44 2.0M
blastHg16KG.txt.gz 2004-09-28 10:06 2.0M
gbDelete_tmp.txt.gz 2005-09-27 05:01 180K
blastHg16KG.sql 2013-10-01 12:48 1.3K
blatCioSav1.sql 2013-10-01 12:48 1.4K
chromInfo.sql 2013-10-01 12:48 392
extFile.sql 2013-10-01 12:48 441
gap.sql 2013-10-01 12:48 704
gbDelete_tmp.sql 2013-10-01 12:48 322
gc5Base.sql 2013-10-01 12:48 887
history.sql 2013-10-01 12:48 533
jgiGene.sql 2013-10-01 12:48 1.0K
jgiPep.sql 2013-10-01 12:48 318
rmsk.sql 2013-10-01 12:48 1.0K
seq.sql 2013-10-01 12:48 586
simpleRepeat.sql 2013-10-01 12:48 1.1K
snapGene.sql 2013-10-01 12:48 1.0K
grp.sql 2014-03-02 03:40 1.4K
grp.txt.gz 2014-03-02 03:40 223
microsat.sql 2015-08-23 12:42 1.5K
microsat.txt.gz 2015-08-23 12:42 1.6K
intronEst.sql 2016-06-05 09:29 2.4K
intronEst.txt.gz 2016-06-05 09:29 27M
all_est.sql 2016-06-05 09:29 2.4K
all_est.txt.gz 2016-06-05 09:29 42M
estOrientInfo.sql 2016-06-05 09:30 1.9K
estOrientInfo.txt.gz 2016-06-05 09:30 12M
chromAlias.sql 2016-09-15 17:56 1.4K
chromAlias.txt.gz 2016-09-15 17:56 12K
refSeqAli.sql 2019-07-28 04:38 2.4K
refSeqAli.txt.gz 2019-07-28 04:38 95K
all_mrna.sql 2020-08-21 06:44 2.4K
all_mrna.txt.gz 2020-08-21 06:44 675K
xenoMrna.sql 2020-08-21 06:44 2.4K
xenoMrna.txt.gz 2020-08-21 06:44 111M
mrnaOrientInfo.sql 2020-08-21 06:44 1.9K
mrnaOrientInfo.txt.gz 2020-08-21 06:44 139K
refGene.sql 2020-08-21 06:44 1.8K
refGene.txt.gz 2020-08-21 06:44 72K
refFlat.sql 2020-08-21 06:44 1.9K
refFlat.txt.gz 2020-08-21 06:44 78K
xenoRefGene.sql 2020-08-21 06:59 1.8K
xenoRefGene.txt.gz 2020-08-21 06:59 7.8M
xenoRefFlat.sql 2020-08-21 06:59 1.9K
xenoRefFlat.txt.gz 2020-08-21 06:59 9.1M
xenoRefSeqAli.sql 2020-08-21 06:59 2.4K
xenoRefSeqAli.txt.gz 2020-08-21 06:59 11M
gbLoaded.sql 2020-08-21 06:59 1.7K
gbLoaded.txt.gz 2020-08-21 06:59 224K
trackDb.sql 2024-03-02 15:16 2.1K
trackDb.txt.gz 2024-03-02 15:16 10K
hgFindSpec.sql 2024-03-02 15:16 1.8K
hgFindSpec.txt.gz 2024-03-02 15:16 707
tableDescriptions.sql 2025-03-29 02:03 1.5K
tableDescriptions.txt.gz 2025-03-29 02:03 4.4K
tableList.sql 2025-03-30 03:39 1.6K
tableList.txt.gz 2025-03-30 03:39 2.3K
bigFiles.sql 2025-03-30 03:39 1.4K
bigFiles.txt.gz 2025-03-30 03:39 33