This directory contains a dump of the UCSC genome annotation
database for the May 2003 freeze of the C. elegans genome from
WormBase (ftp://ftp.sanger.ac.uk/pub/wormbase/WS100/CHROMOSOMES/).
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=ce1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
-----------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu,
then go to the directory goldenPath/ceMay2003/database/. To download
multiple files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
------------------------------------------------------------------
All the tables in this directory are freely usable for any purpose
except for the following:
softberryGene.txt and softberryPep.txt - Free for academic
and nonprofit use. Commercial users please contact
Softberry Inc. at http://www.softberry.com.
The C. elegans sequence is made freely available to the community by the
Genome Sequencing Center at the WUSTL School of Medicine. Please see the
WUSTL data use policy at http://genome.wustl.edu/data.cgi for data use
restrictions and citation information.
Name Last modified Size Description
Parent Directory -
wabaCbr.txt.gz 2003-06-24 13:02 260M
kimExpDistance.txt.gz 2003-10-30 06:58 118M
chrIII_blastzSelf.txt.gz 2003-06-24 12:24 59M
chrIII_chainSelfLink.txt.gz 2003-06-24 12:31 56M
chrV_blastzSelf.txt.gz 2003-06-24 12:46 55M
chrV_chainSelfLink.txt.gz 2003-06-24 12:50 50M
chrI_blastzSelf.txt.gz 2003-06-24 12:41 47M
chrI_chainSelfLink.txt.gz 2003-06-24 12:44 44M
chrII_blastzSelf.txt.gz 2003-06-24 12:33 42M
chrIV_blastzSelf.txt.gz 2003-06-24 12:37 41M
chrII_chainSelfLink.txt.gz 2003-06-24 12:35 40M
chrIV_chainSelfLink.txt.gz 2003-06-24 12:39 39M
chrX_blastzSelf.txt.gz 2003-06-24 12:53 22M
chrIII_chainSelf.txt.gz 2003-06-24 12:29 22M
chrV_chainSelf.txt.gz 2003-06-24 12:49 21M
chrX_chainSelfLink.txt.gz 2003-06-24 12:57 21M
sangerBlastTab.txt.gz 2003-10-09 20:19 18M
chrV_blastzCb1.txt.gz 2003-06-24 12:45 18M
chrI_chainSelf.txt.gz 2003-06-24 12:43 16M
chrIV_chainSelf.txt.gz 2003-06-24 12:38 16M
chrII_chainSelf.txt.gz 2003-06-24 12:34 16M
chrIV_blastzCb1.txt.gz 2003-06-24 12:36 16M
chrV_cb1ChainLink.txt.gz 2003-06-24 12:48 15M
chrIII_blastzCb1.txt.gz 2003-06-24 12:22 15M
chrIV_cb1ChainLink.txt.gz 2003-06-24 12:38 14M
chrII_blastzCb1.txt.gz 2003-06-24 12:32 13M
chrIII_cb1ChainLink.txt.gz 2003-06-24 12:28 13M
chrI_blastzCb1.txt.gz 2003-06-24 12:40 12M
chrII_cb1ChainLink.txt.gz 2003-06-24 12:34 12M
chrX_chainSelf.txt.gz 2003-06-24 12:55 11M
chrI_cb1ChainLink.txt.gz 2003-06-24 12:42 10M
all_est.txt.gz 2006-09-10 08:45 7.2M
chrX_blastzCb1.txt.gz 2003-06-24 12:52 7.2M
refMrna.txt.gz 2004-05-20 05:15 7.1M
chrV_cb1Chain.txt.gz 2003-06-24 12:48 6.4M
chrX_cb1ChainLink.txt.gz 2003-06-24 12:54 6.3M
chrIV_cb1Chain.txt.gz 2003-06-24 12:38 5.6M
chrIII_cb1Chain.txt.gz 2003-06-24 12:27 5.5M
chrII_cb1Chain.txt.gz 2003-06-24 12:33 5.0M
sangerPep.txt.gz 2003-09-25 08:55 4.8M
softberryPep.txt.gz 2003-08-29 07:24 4.7M
chrI_cb1Chain.txt.gz 2003-06-24 12:42 4.3M
twinscanPep.txt.gz 2004-03-24 05:08 4.2M
seq.txt.gz 2003-06-24 12:59 2.7M
chrIV_wabaCbr.txt.gz 2003-06-24 12:40 2.5M
chrX_cb1Chain.txt.gz 2003-06-24 12:54 2.2M
chrIII_wabaCbr.txt.gz 2003-06-24 12:32 2.2M
gbCdnaInfo.txt.gz 2004-09-28 10:04 1.8M
chrV_wabaCbr.txt.gz 2003-06-24 12:51 1.8M
chrII_wabaCbr.txt.gz 2003-06-24 12:36 1.6M
chrI_wabaCbr.txt.gz 2003-06-24 12:45 1.5M
refSeqAli.txt.gz 2003-06-24 12:59 1.3M
chrI_est.txt.gz 2003-06-24 12:45 1.3M
sangerGene.txt.gz 2003-10-30 06:55 1.2M
refFlat.txt.gz 2003-06-24 12:58 1.1M
chrIII_est.txt.gz 2003-06-24 12:32 1.1M
refGene.txt.gz 2004-05-20 05:15 1.1M
softberryGene.txt.gz 2003-08-29 07:24 1.0M
chrII_est.txt.gz 2003-06-24 12:36 1.0M
chrIV_est.txt.gz 2003-06-24 12:40 1.0M
chrX_wabaCbr.txt.gz 2003-06-24 12:58 1.0M
twinscan.txt.gz 2004-05-05 05:06 958K
chrV_est.txt.gz 2003-06-24 12:51 950K
chrX_est.txt.gz 2003-06-24 12:57 825K
simpleRepeat.txt.gz 2003-06-24 12:59 822K
sangerLinks.txt.gz 2003-10-30 06:55 550K
mrnaClone.txt.gz 2003-06-24 12:58 510K
refLink.txt.gz 2004-05-20 05:15 496K
chrV_rmsk.txt.gz 2003-06-24 12:51 428K
genomicSuperDups.txt.gz 2006-07-05 07:02 421K
chrI_rmsk.txt.gz 2003-06-24 12:45 391K
chrIII_rmsk.txt.gz 2003-06-24 12:32 370K
chrIV_rmsk.txt.gz 2003-06-24 12:40 358K
softberryHom.txt.gz 2003-08-29 07:24 352K
sangerCanonical.txt.gz 2003-10-30 06:55 340K
chrII_rmsk.txt.gz 2003-06-24 12:36 329K
chrX_blatFugu.txt.gz 2003-06-24 12:54 310K
chrX_rmsk.txt.gz 2003-06-24 12:58 263K
chrIV_blatFugu.txt.gz 2003-06-24 12:38 228K
chrV_blatFugu.txt.gz 2003-06-24 12:48 223K
chrIII_blatFugu.txt.gz 2003-06-24 12:27 219K
chrI_blatFugu.txt.gz 2003-06-24 12:42 214K
chrII_blatFugu.txt.gz 2003-06-24 12:33 172K
all_mrna.txt.gz 2003-06-24 12:22 137K
productName.txt.gz 2003-06-24 12:58 117K
sangerToRefSeq.txt.gz 2003-10-09 20:19 107K
sangerIsoforms.txt.gz 2003-10-09 20:19 102K
geneName.txt.gz 2003-06-24 12:58 101K
orfToGene.txt.gz 2003-10-09 20:19 98K
sangerToKim.txt.gz 2003-10-09 20:19 95K
sangerToPfam.txt.gz 2004-04-17 05:03 69K
refSeqStatus.txt.gz 2004-06-23 04:28 69K
chrM_est.txt.gz 2003-06-24 12:45 36K
author.txt.gz 2003-06-24 12:22 30K
chrX_mrna.txt.gz 2003-06-24 12:57 27K
chrI_mrna.txt.gz 2003-06-24 12:45 26K
gcPercent.txt.gz 2003-06-24 12:58 26K
chrIII_mrna.txt.gz 2003-06-24 12:32 25K
description.txt.gz 2003-06-24 12:58 23K
chrIV_mrna.txt.gz 2003-06-24 12:40 21K
chrV_mrna.txt.gz 2003-06-24 12:51 20K
cds.txt.gz 2003-06-24 12:22 20K
chrII_mrna.txt.gz 2003-06-24 12:36 17K
trackDb.txt.gz 2008-07-16 03:14 13K
chrV_gold.txt.gz 2003-06-24 12:51 12K
chrX_gold.txt.gz 2003-06-24 12:57 11K
chrII_gold.txt.gz 2003-06-24 12:36 8.7K
chrIV_gold.txt.gz 2003-06-24 12:40 8.7K
library.txt.gz 2003-06-24 12:58 8.3K
chrI_gold.txt.gz 2003-06-24 12:45 8.0K
chrIII_gold.txt.gz 2003-06-24 12:32 6.9K
tableDescriptions.txt.gz 2008-05-18 03:15 6.2K
keyword.txt.gz 2003-06-24 12:58 4.3K
genomicSuperDups.sql 2006-07-05 07:02 2.5K
miRNA.txt.gz 2004-03-20 05:05 2.1K
chrM_blastzCb1.txt.gz 2003-06-24 12:45 2.1K
all_est.sql 2006-09-10 08:45 2.1K
trackDb.sql 2008-07-16 03:14 2.0K
chrM_cb1ChainLink.txt.gz 2003-06-24 12:45 2.0K
gbCdnaInfo.sql 2013-10-01 12:48 1.5K
refSeqAli.sql 2013-10-01 12:48 1.3K
chrIII_blastzSelf.sql 2013-10-01 12:48 1.3K
chrIV_blastzSelf.sql 2013-10-01 12:48 1.3K
chrII_blastzSelf.sql 2013-10-01 12:48 1.3K
chrIII_blastzCb1.sql 2013-10-01 12:48 1.3K
chrX_blastzSelf.sql 2013-10-01 12:48 1.3K
chrV_blastzSelf.sql 2013-10-01 12:48 1.3K
chrM_blastzSelf.sql 2013-10-01 12:48 1.3K
chrI_blastzSelf.sql 2013-10-01 12:48 1.3K
chrIV_blastzCb1.sql 2013-10-01 12:48 1.3K
chrII_blastzCb1.sql 2013-10-01 12:48 1.3K
chrIII_blatFugu.sql 2013-10-01 12:48 1.3K
chrX_blastzCb1.sql 2013-10-01 12:48 1.3K
chrV_blastzCb1.sql 2013-10-01 12:48 1.3K
chrM_blastzCb1.sql 2013-10-01 12:48 1.3K
chrI_blastzCb1.sql 2013-10-01 12:48 1.3K
chrIV_blatFugu.sql 2013-10-01 12:48 1.3K
chrII_blatFugu.sql 2013-10-01 12:48 1.3K
chrX_blatFugu.sql 2013-10-01 12:48 1.3K
chrV_blatFugu.sql 2013-10-01 12:48 1.3K
chrM_blatFugu.sql 2013-10-01 12:48 1.3K
chrI_blatFugu.sql 2013-10-01 12:48 1.3K
chrIII_mrna.sql 2013-10-01 12:48 1.3K
chrIV_mrna.sql 2013-10-01 12:48 1.3K
chrII_mrna.sql 2013-10-01 12:48 1.3K
chrIII_est.sql 2013-10-01 12:48 1.3K
chrX_mrna.sql 2013-10-01 12:48 1.3K
chrV_mrna.sql 2013-10-01 12:48 1.3K
chrM_mrna.sql 2013-10-01 12:48 1.3K
chrI_mrna.sql 2013-10-01 12:48 1.3K
chrIV_est.sql 2013-10-01 12:48 1.3K
chrII_est.sql 2013-10-01 12:48 1.3K
chrX_est.sql 2013-10-01 12:48 1.3K
chrV_est.sql 2013-10-01 12:48 1.3K
chrM_est.sql 2013-10-01 12:48 1.3K
chrI_est.sql 2013-10-01 12:48 1.3K
all_mrna.sql 2013-10-01 12:48 1.3K
tableDescriptions.sql 2008-05-18 03:15 1.2K
simpleRepeat.sql 2013-10-01 12:48 1.1K
chrIII_rmsk.sql 2013-10-01 12:48 1.0K
chrIV_rmsk.sql 2013-10-01 12:48 1.0K
chrII_rmsk.sql 2013-10-01 12:48 1.0K
chrX_rmsk.sql 2013-10-01 12:48 1.0K
chrV_rmsk.sql 2013-10-01 12:48 1.0K
chrM_rmsk.sql 2013-10-01 12:48 1.0K
chrI_rmsk.sql 2013-10-01 12:48 1.0K
chrIII_chainSelf.sql 2013-10-01 12:48 856
chrIV_chainSelf.sql 2013-10-01 12:48 854
chrII_chainSelf.sql 2013-10-01 12:48 854
chrIII_cb1Chain.sql 2013-10-01 12:48 854
chrX_chainSelf.sql 2013-10-01 12:48 852
chrV_chainSelf.sql 2013-10-01 12:48 852
chrM_chainSelf.sql 2013-10-01 12:48 852
chrI_chainSelf.sql 2013-10-01 12:48 852
chrIV_cb1Chain.sql 2013-10-01 12:48 852
chrII_cb1Chain.sql 2013-10-01 12:48 852
chrX_cb1Chain.sql 2013-10-01 12:48 850
chrV_cb1Chain.sql 2013-10-01 12:48 850
chrM_cb1Chain.sql 2013-10-01 12:48 850
chrI_cb1Chain.sql 2013-10-01 12:48 850
wabaCbr.sql 2013-10-01 12:48 825
hgFindSpec.sql 2013-10-01 12:48 825
sangerGene.sql 2013-10-01 12:48 824
sangerBlastTab.sql 2013-10-01 12:48 808
refLink.sql 2013-10-01 12:48 802
chrM_gold.sql 2013-10-01 12:48 786
chrIII_gold.sql 2013-10-01 12:48 783
chrIV_gold.sql 2013-10-01 12:48 781
chrII_gold.sql 2013-10-01 12:48 781
chrX_gold.sql 2013-10-01 12:48 779
chrV_gold.sql 2013-10-01 12:48 779
chrI_gold.sql 2013-10-01 12:48 779
miRNA.sql 2013-10-01 12:48 776
refFlat.sql 2013-10-01 12:48 769
twinscan.sql 2013-10-01 12:48 755
refGene.sql 2013-10-01 12:48 753
softberryGene.sql 2013-10-01 12:48 752
chrM_gap.sql 2013-10-01 12:48 709
chrIII_gap.sql 2013-10-01 12:48 696
chrIV_gap.sql 2013-10-01 12:48 694
chrII_gap.sql 2013-10-01 12:48 694
chrX_gap.sql 2013-10-01 12:48 692
chrI_gap.sql 2013-10-01 12:48 692
chrV_gap.sql 2013-10-01 12:48 685
chrM_rmsk.txt.gz 2003-06-24 12:45 662
sangerCanonical.sql 2013-10-01 12:48 612
chrIV_gap.txt.gz 2004-05-01 05:06 601
seq.sql 2013-10-01 12:48 588
chrIII_chainSelfLink.sql 2013-10-01 12:48 579
chrIV_chainSelfLink.sql 2013-10-01 12:48 577
chrII_chainSelfLink.sql 2013-10-01 12:48 577
chrIII_cb1ChainLink.sql 2013-10-01 12:48 577
chrX_chainSelfLink.sql 2013-10-01 12:48 575
chrV_chainSelfLink.sql 2013-10-01 12:48 575
chrM_chainSelfLink.sql 2013-10-01 12:48 575
chrI_chainSelfLink.sql 2013-10-01 12:48 575
chrIV_cb1ChainLink.sql 2013-10-01 12:48 575
chrII_cb1ChainLink.sql 2013-10-01 12:48 575
chrX_cb1ChainLink.sql 2013-10-01 12:48 573
chrV_cb1ChainLink.sql 2013-10-01 12:48 573
chrM_cb1ChainLink.sql 2013-10-01 12:48 573
chrI_cb1ChainLink.sql 2013-10-01 12:48 573
chrIII_wabaCbr.sql 2013-10-01 12:48 568
chrIV_wabaCbr.sql 2013-10-01 12:48 566
chrII_wabaCbr.sql 2013-10-01 12:48 566
chrX_wabaCbr.sql 2013-10-01 12:48 564
chrV_wabaCbr.sql 2013-10-01 12:48 564
chrM_wabaCbr.sql 2013-10-01 12:48 564
chrI_wabaCbr.sql 2013-10-01 12:48 564
gcPercent.sql 2013-10-01 12:48 544
hgFindSpec.txt.gz 2005-04-23 05:28 533
history.sql 2013-10-01 12:48 499
extFile.sql 2013-10-01 12:48 443
sangerLinks.sql 2013-10-01 12:48 419
chrM_wabaCbr.txt.gz 2003-06-24 12:45 412
sangerIsoforms.sql 2013-10-01 12:48 405
chromInfo.sql 2013-10-01 12:48 394
kimExpDistance.sql 2013-10-01 12:48 392
chrM_cb1Chain.txt.gz 2003-06-24 12:45 391
softberryHom.sql 2013-10-01 12:48 381
sangerToRefSeq.sql 2013-10-01 12:48 381
sangerToPfam.sql 2013-10-01 12:48 377
sangerToKim.sql 2013-10-01 12:48 375
orfToGene.sql 2013-10-01 12:48 364
grp.sql 2013-10-01 12:48 358
refSeqStatus.sql 2013-10-01 12:48 350
productName.sql 2013-10-01 12:48 342
development.sql 2013-10-01 12:48 342
description.sql 2013-10-01 12:48 342
mrnaClone.sql 2013-10-01 12:48 338
twinscanPep.sql 2013-10-01 12:48 337
organism.sql 2013-10-01 12:48 336
geneName.sql 2013-10-01 12:48 336
library.sql 2013-10-01 12:48 334
keyword.sql 2013-10-01 12:48 334
tissue.sql 2013-10-01 12:48 332
source.sql 2013-10-01 12:48 332
softberryPep.sql 2013-10-01 12:48 332
author.sql 2013-10-01 12:48 332
refMrna.sql 2013-10-01 12:48 329
cell.sql 2013-10-01 12:48 328
sex.sql 2013-10-01 12:48 326
sangerPep.sql 2013-10-01 12:48 326
cds.sql 2013-10-01 12:48 326
development.txt.gz 2003-06-24 12:58 318
history.txt.gz 2003-06-24 12:58 271
grp.txt.gz 2004-10-22 04:25 204
chrIII_gap.txt.gz 2004-05-01 05:06 161
extFile.txt.gz 2003-06-24 12:58 159
chromInfo.txt.gz 2003-06-24 12:58 143
sex.txt.gz 2003-06-24 12:59 140
chrM_blatFugu.txt.gz 2003-06-24 12:45 137
chrM_blastzSelf.txt.gz 2003-06-24 12:45 137
tissue.txt.gz 2003-06-24 12:59 132
chrM_chainSelf.txt.gz 2003-06-24 12:45 120
chrM_mrna.txt.gz 2003-06-24 12:45 117
chrM_chainSelfLink.txt.gz 2003-06-24 12:45 97
chrII_gap.txt.gz 2004-05-01 05:06 93
source.txt.gz 2003-06-24 12:59 83
chrI_gap.txt.gz 2004-05-01 05:06 82
chrX_gap.txt.gz 2004-05-01 05:06 71
organism.txt.gz 2003-06-24 12:58 65
chrM_gold.txt.gz 2004-05-01 05:06 64
cell.txt.gz 2003-06-24 12:22 44
chrV_gap.txt.gz 2003-06-24 12:51 33
chrM_gap.txt.gz 2004-05-01 05:06 33