This directory contains a dump of the UCSC genome annotation
database for the May 2003 freeze of the C. elegans genome from
WormBase (ftp://ftp.sanger.ac.uk/pub/wormbase/WS100/CHROMOSOMES/).
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=ce1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
-----------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu,
then go to the directory goldenPath/ceMay2003/database/. To download
multiple files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
------------------------------------------------------------------
All the tables in this directory are freely usable for any purpose
except for the following:
softberryGene.txt and softberryPep.txt - Free for academic
and nonprofit use. Commercial users please contact
Softberry Inc. at http://www.softberry.com.
The C. elegans sequence is made freely available to the community by the
Genome Sequencing Center at the WUSTL School of Medicine. Please see the
WUSTL data use policy at http://genome.wustl.edu/data.cgi for data use
restrictions and citation information.
Name Last modified Size Description
Parent Directory -
chrM_gap.txt.gz 2004-05-01 05:06 33
chrV_gap.txt.gz 2003-06-24 12:51 33
cell.txt.gz 2003-06-24 12:22 44
chrM_gold.txt.gz 2004-05-01 05:06 64
organism.txt.gz 2003-06-24 12:58 65
chrX_gap.txt.gz 2004-05-01 05:06 71
chrI_gap.txt.gz 2004-05-01 05:06 82
source.txt.gz 2003-06-24 12:59 83
chrII_gap.txt.gz 2004-05-01 05:06 93
chrM_chainSelfLink.txt.gz 2003-06-24 12:45 97
chrM_mrna.txt.gz 2003-06-24 12:45 117
chrM_chainSelf.txt.gz 2003-06-24 12:45 120
tissue.txt.gz 2003-06-24 12:59 132
chrM_blastzSelf.txt.gz 2003-06-24 12:45 137
chrM_blatFugu.txt.gz 2003-06-24 12:45 137
sex.txt.gz 2003-06-24 12:59 140
chromInfo.txt.gz 2003-06-24 12:58 143
extFile.txt.gz 2003-06-24 12:58 159
chrIII_gap.txt.gz 2004-05-01 05:06 161
grp.txt.gz 2004-10-22 04:25 204
history.txt.gz 2003-06-24 12:58 271
development.txt.gz 2003-06-24 12:58 318
cds.sql 2013-10-01 12:48 326
sangerPep.sql 2013-10-01 12:48 326
sex.sql 2013-10-01 12:48 326
cell.sql 2013-10-01 12:48 328
refMrna.sql 2013-10-01 12:48 329
author.sql 2013-10-01 12:48 332
softberryPep.sql 2013-10-01 12:48 332
source.sql 2013-10-01 12:48 332
tissue.sql 2013-10-01 12:48 332
keyword.sql 2013-10-01 12:48 334
library.sql 2013-10-01 12:48 334
geneName.sql 2013-10-01 12:48 336
organism.sql 2013-10-01 12:48 336
twinscanPep.sql 2013-10-01 12:48 337
mrnaClone.sql 2013-10-01 12:48 338
description.sql 2013-10-01 12:48 342
development.sql 2013-10-01 12:48 342
productName.sql 2013-10-01 12:48 342
refSeqStatus.sql 2013-10-01 12:48 350
grp.sql 2013-10-01 12:48 358
orfToGene.sql 2013-10-01 12:48 364
sangerToKim.sql 2013-10-01 12:48 375
sangerToPfam.sql 2013-10-01 12:48 377
sangerToRefSeq.sql 2013-10-01 12:48 381
softberryHom.sql 2013-10-01 12:48 381
chrM_cb1Chain.txt.gz 2003-06-24 12:45 391
kimExpDistance.sql 2013-10-01 12:48 392
chromInfo.sql 2013-10-01 12:48 394
sangerIsoforms.sql 2013-10-01 12:48 405
chrM_wabaCbr.txt.gz 2003-06-24 12:45 412
sangerLinks.sql 2013-10-01 12:48 419
extFile.sql 2013-10-01 12:48 443
history.sql 2013-10-01 12:48 499
hgFindSpec.txt.gz 2005-04-23 05:28 533
gcPercent.sql 2013-10-01 12:48 544
chrI_wabaCbr.sql 2013-10-01 12:48 564
chrM_wabaCbr.sql 2013-10-01 12:48 564
chrV_wabaCbr.sql 2013-10-01 12:48 564
chrX_wabaCbr.sql 2013-10-01 12:48 564
chrII_wabaCbr.sql 2013-10-01 12:48 566
chrIV_wabaCbr.sql 2013-10-01 12:48 566
chrIII_wabaCbr.sql 2013-10-01 12:48 568
chrI_cb1ChainLink.sql 2013-10-01 12:48 573
chrM_cb1ChainLink.sql 2013-10-01 12:48 573
chrV_cb1ChainLink.sql 2013-10-01 12:48 573
chrX_cb1ChainLink.sql 2013-10-01 12:48 573
chrII_cb1ChainLink.sql 2013-10-01 12:48 575
chrIV_cb1ChainLink.sql 2013-10-01 12:48 575
chrI_chainSelfLink.sql 2013-10-01 12:48 575
chrM_chainSelfLink.sql 2013-10-01 12:48 575
chrV_chainSelfLink.sql 2013-10-01 12:48 575
chrX_chainSelfLink.sql 2013-10-01 12:48 575
chrIII_cb1ChainLink.sql 2013-10-01 12:48 577
chrII_chainSelfLink.sql 2013-10-01 12:48 577
chrIV_chainSelfLink.sql 2013-10-01 12:48 577
chrIII_chainSelfLink.sql 2013-10-01 12:48 579
seq.sql 2013-10-01 12:48 588
chrIV_gap.txt.gz 2004-05-01 05:06 601
sangerCanonical.sql 2013-10-01 12:48 612
chrM_rmsk.txt.gz 2003-06-24 12:45 662
chrV_gap.sql 2013-10-01 12:48 685
chrI_gap.sql 2013-10-01 12:48 692
chrX_gap.sql 2013-10-01 12:48 692
chrII_gap.sql 2013-10-01 12:48 694
chrIV_gap.sql 2013-10-01 12:48 694
chrIII_gap.sql 2013-10-01 12:48 696
chrM_gap.sql 2013-10-01 12:48 709
softberryGene.sql 2013-10-01 12:48 752
refGene.sql 2013-10-01 12:48 753
twinscan.sql 2013-10-01 12:48 755
refFlat.sql 2013-10-01 12:48 769
miRNA.sql 2013-10-01 12:48 776
chrI_gold.sql 2013-10-01 12:48 779
chrV_gold.sql 2013-10-01 12:48 779
chrX_gold.sql 2013-10-01 12:48 779
chrII_gold.sql 2013-10-01 12:48 781
chrIV_gold.sql 2013-10-01 12:48 781
chrIII_gold.sql 2013-10-01 12:48 783
chrM_gold.sql 2013-10-01 12:48 786
refLink.sql 2013-10-01 12:48 802
sangerBlastTab.sql 2013-10-01 12:48 808
sangerGene.sql 2013-10-01 12:48 824
hgFindSpec.sql 2013-10-01 12:48 825
wabaCbr.sql 2013-10-01 12:48 825
chrI_cb1Chain.sql 2013-10-01 12:48 850
chrM_cb1Chain.sql 2013-10-01 12:48 850
chrV_cb1Chain.sql 2013-10-01 12:48 850
chrX_cb1Chain.sql 2013-10-01 12:48 850
chrII_cb1Chain.sql 2013-10-01 12:48 852
chrIV_cb1Chain.sql 2013-10-01 12:48 852
chrI_chainSelf.sql 2013-10-01 12:48 852
chrM_chainSelf.sql 2013-10-01 12:48 852
chrV_chainSelf.sql 2013-10-01 12:48 852
chrX_chainSelf.sql 2013-10-01 12:48 852
chrIII_cb1Chain.sql 2013-10-01 12:48 854
chrII_chainSelf.sql 2013-10-01 12:48 854
chrIV_chainSelf.sql 2013-10-01 12:48 854
chrIII_chainSelf.sql 2013-10-01 12:48 856
chrI_rmsk.sql 2013-10-01 12:48 1.0K
chrM_rmsk.sql 2013-10-01 12:48 1.0K
chrV_rmsk.sql 2013-10-01 12:48 1.0K
chrX_rmsk.sql 2013-10-01 12:48 1.0K
chrII_rmsk.sql 2013-10-01 12:48 1.0K
chrIV_rmsk.sql 2013-10-01 12:48 1.0K
chrIII_rmsk.sql 2013-10-01 12:48 1.0K
simpleRepeat.sql 2013-10-01 12:48 1.1K
tableDescriptions.sql 2008-05-18 03:15 1.2K
all_mrna.sql 2013-10-01 12:48 1.3K
chrI_est.sql 2013-10-01 12:48 1.3K
chrM_est.sql 2013-10-01 12:48 1.3K
chrV_est.sql 2013-10-01 12:48 1.3K
chrX_est.sql 2013-10-01 12:48 1.3K
chrII_est.sql 2013-10-01 12:48 1.3K
chrIV_est.sql 2013-10-01 12:48 1.3K
chrI_mrna.sql 2013-10-01 12:48 1.3K
chrM_mrna.sql 2013-10-01 12:48 1.3K
chrV_mrna.sql 2013-10-01 12:48 1.3K
chrX_mrna.sql 2013-10-01 12:48 1.3K
chrIII_est.sql 2013-10-01 12:48 1.3K
chrII_mrna.sql 2013-10-01 12:48 1.3K
chrIV_mrna.sql 2013-10-01 12:48 1.3K
chrIII_mrna.sql 2013-10-01 12:48 1.3K
chrI_blatFugu.sql 2013-10-01 12:48 1.3K
chrM_blatFugu.sql 2013-10-01 12:48 1.3K
chrV_blatFugu.sql 2013-10-01 12:48 1.3K
chrX_blatFugu.sql 2013-10-01 12:48 1.3K
chrII_blatFugu.sql 2013-10-01 12:48 1.3K
chrIV_blatFugu.sql 2013-10-01 12:48 1.3K
chrI_blastzCb1.sql 2013-10-01 12:48 1.3K
chrM_blastzCb1.sql 2013-10-01 12:48 1.3K
chrV_blastzCb1.sql 2013-10-01 12:48 1.3K
chrX_blastzCb1.sql 2013-10-01 12:48 1.3K
chrIII_blatFugu.sql 2013-10-01 12:48 1.3K
chrII_blastzCb1.sql 2013-10-01 12:48 1.3K
chrIV_blastzCb1.sql 2013-10-01 12:48 1.3K
chrI_blastzSelf.sql 2013-10-01 12:48 1.3K
chrM_blastzSelf.sql 2013-10-01 12:48 1.3K
chrV_blastzSelf.sql 2013-10-01 12:48 1.3K
chrX_blastzSelf.sql 2013-10-01 12:48 1.3K
chrIII_blastzCb1.sql 2013-10-01 12:48 1.3K
chrII_blastzSelf.sql 2013-10-01 12:48 1.3K
chrIV_blastzSelf.sql 2013-10-01 12:48 1.3K
chrIII_blastzSelf.sql 2013-10-01 12:48 1.3K
refSeqAli.sql 2013-10-01 12:48 1.3K
gbCdnaInfo.sql 2013-10-01 12:48 1.5K
chrM_cb1ChainLink.txt.gz 2003-06-24 12:45 2.0K
trackDb.sql 2008-07-16 03:14 2.0K
all_est.sql 2006-09-10 08:45 2.1K
chrM_blastzCb1.txt.gz 2003-06-24 12:45 2.1K
miRNA.txt.gz 2004-03-20 05:05 2.1K
genomicSuperDups.sql 2006-07-05 07:02 2.5K
keyword.txt.gz 2003-06-24 12:58 4.3K
tableDescriptions.txt.gz 2008-05-18 03:15 6.2K
chrIII_gold.txt.gz 2003-06-24 12:32 6.9K
chrI_gold.txt.gz 2003-06-24 12:45 8.0K
library.txt.gz 2003-06-24 12:58 8.3K
chrIV_gold.txt.gz 2003-06-24 12:40 8.7K
chrII_gold.txt.gz 2003-06-24 12:36 8.7K
chrX_gold.txt.gz 2003-06-24 12:57 11K
chrV_gold.txt.gz 2003-06-24 12:51 12K
trackDb.txt.gz 2008-07-16 03:14 13K
chrII_mrna.txt.gz 2003-06-24 12:36 17K
cds.txt.gz 2003-06-24 12:22 20K
chrV_mrna.txt.gz 2003-06-24 12:51 20K
chrIV_mrna.txt.gz 2003-06-24 12:40 21K
description.txt.gz 2003-06-24 12:58 23K
chrIII_mrna.txt.gz 2003-06-24 12:32 25K
gcPercent.txt.gz 2003-06-24 12:58 26K
chrI_mrna.txt.gz 2003-06-24 12:45 26K
chrX_mrna.txt.gz 2003-06-24 12:57 27K
author.txt.gz 2003-06-24 12:22 30K
chrM_est.txt.gz 2003-06-24 12:45 36K
refSeqStatus.txt.gz 2004-06-23 04:28 69K
sangerToPfam.txt.gz 2004-04-17 05:03 69K
sangerToKim.txt.gz 2003-10-09 20:19 95K
orfToGene.txt.gz 2003-10-09 20:19 98K
geneName.txt.gz 2003-06-24 12:58 101K
sangerIsoforms.txt.gz 2003-10-09 20:19 102K
sangerToRefSeq.txt.gz 2003-10-09 20:19 107K
productName.txt.gz 2003-06-24 12:58 117K
all_mrna.txt.gz 2003-06-24 12:22 137K
chrII_blatFugu.txt.gz 2003-06-24 12:33 172K
chrI_blatFugu.txt.gz 2003-06-24 12:42 214K
chrIII_blatFugu.txt.gz 2003-06-24 12:27 219K
chrV_blatFugu.txt.gz 2003-06-24 12:48 223K
chrIV_blatFugu.txt.gz 2003-06-24 12:38 228K
chrX_rmsk.txt.gz 2003-06-24 12:58 263K
chrX_blatFugu.txt.gz 2003-06-24 12:54 310K
chrII_rmsk.txt.gz 2003-06-24 12:36 329K
sangerCanonical.txt.gz 2003-10-30 06:55 340K
softberryHom.txt.gz 2003-08-29 07:24 352K
chrIV_rmsk.txt.gz 2003-06-24 12:40 358K
chrIII_rmsk.txt.gz 2003-06-24 12:32 370K
chrI_rmsk.txt.gz 2003-06-24 12:45 391K
genomicSuperDups.txt.gz 2006-07-05 07:02 421K
chrV_rmsk.txt.gz 2003-06-24 12:51 428K
refLink.txt.gz 2004-05-20 05:15 496K
mrnaClone.txt.gz 2003-06-24 12:58 510K
sangerLinks.txt.gz 2003-10-30 06:55 550K
simpleRepeat.txt.gz 2003-06-24 12:59 822K
chrX_est.txt.gz 2003-06-24 12:57 825K
chrV_est.txt.gz 2003-06-24 12:51 950K
twinscan.txt.gz 2004-05-05 05:06 958K
chrX_wabaCbr.txt.gz 2003-06-24 12:58 1.0M
chrIV_est.txt.gz 2003-06-24 12:40 1.0M
chrII_est.txt.gz 2003-06-24 12:36 1.0M
softberryGene.txt.gz 2003-08-29 07:24 1.0M
refGene.txt.gz 2004-05-20 05:15 1.1M
chrIII_est.txt.gz 2003-06-24 12:32 1.1M
refFlat.txt.gz 2003-06-24 12:58 1.1M
sangerGene.txt.gz 2003-10-30 06:55 1.2M
chrI_est.txt.gz 2003-06-24 12:45 1.3M
refSeqAli.txt.gz 2003-06-24 12:59 1.3M
chrI_wabaCbr.txt.gz 2003-06-24 12:45 1.5M
chrII_wabaCbr.txt.gz 2003-06-24 12:36 1.6M
chrV_wabaCbr.txt.gz 2003-06-24 12:51 1.8M
gbCdnaInfo.txt.gz 2004-09-28 10:04 1.8M
chrIII_wabaCbr.txt.gz 2003-06-24 12:32 2.2M
chrX_cb1Chain.txt.gz 2003-06-24 12:54 2.2M
chrIV_wabaCbr.txt.gz 2003-06-24 12:40 2.5M
seq.txt.gz 2003-06-24 12:59 2.7M
twinscanPep.txt.gz 2004-03-24 05:08 4.2M
chrI_cb1Chain.txt.gz 2003-06-24 12:42 4.3M
softberryPep.txt.gz 2003-08-29 07:24 4.7M
sangerPep.txt.gz 2003-09-25 08:55 4.8M
chrII_cb1Chain.txt.gz 2003-06-24 12:33 5.0M
chrIII_cb1Chain.txt.gz 2003-06-24 12:27 5.5M
chrIV_cb1Chain.txt.gz 2003-06-24 12:38 5.6M
chrX_cb1ChainLink.txt.gz 2003-06-24 12:54 6.3M
chrV_cb1Chain.txt.gz 2003-06-24 12:48 6.4M
refMrna.txt.gz 2004-05-20 05:15 7.1M
chrX_blastzCb1.txt.gz 2003-06-24 12:52 7.2M
all_est.txt.gz 2006-09-10 08:45 7.2M
chrI_cb1ChainLink.txt.gz 2003-06-24 12:42 10M
chrX_chainSelf.txt.gz 2003-06-24 12:55 11M
chrII_cb1ChainLink.txt.gz 2003-06-24 12:34 12M
chrI_blastzCb1.txt.gz 2003-06-24 12:40 12M
chrIII_cb1ChainLink.txt.gz 2003-06-24 12:28 13M
chrII_blastzCb1.txt.gz 2003-06-24 12:32 13M
chrIV_cb1ChainLink.txt.gz 2003-06-24 12:38 14M
chrIII_blastzCb1.txt.gz 2003-06-24 12:22 15M
chrV_cb1ChainLink.txt.gz 2003-06-24 12:48 15M
chrIV_blastzCb1.txt.gz 2003-06-24 12:36 16M
chrII_chainSelf.txt.gz 2003-06-24 12:34 16M
chrIV_chainSelf.txt.gz 2003-06-24 12:38 16M
chrI_chainSelf.txt.gz 2003-06-24 12:43 16M
chrV_blastzCb1.txt.gz 2003-06-24 12:45 18M
sangerBlastTab.txt.gz 2003-10-09 20:19 18M
chrX_chainSelfLink.txt.gz 2003-06-24 12:57 21M
chrV_chainSelf.txt.gz 2003-06-24 12:49 21M
chrIII_chainSelf.txt.gz 2003-06-24 12:29 22M
chrX_blastzSelf.txt.gz 2003-06-24 12:53 22M
chrIV_chainSelfLink.txt.gz 2003-06-24 12:39 39M
chrII_chainSelfLink.txt.gz 2003-06-24 12:35 40M
chrIV_blastzSelf.txt.gz 2003-06-24 12:37 41M
chrII_blastzSelf.txt.gz 2003-06-24 12:33 42M
chrI_chainSelfLink.txt.gz 2003-06-24 12:44 44M
chrI_blastzSelf.txt.gz 2003-06-24 12:41 47M
chrV_chainSelfLink.txt.gz 2003-06-24 12:50 50M
chrV_blastzSelf.txt.gz 2003-06-24 12:46 55M
chrIII_chainSelfLink.txt.gz 2003-06-24 12:31 56M
chrIII_blastzSelf.txt.gz 2003-06-24 12:24 59M
kimExpDistance.txt.gz 2003-10-30 06:58 118M
wabaCbr.txt.gz 2003-06-24 13:02 260M