This directory contains a dump of the UCSC genome annotation
database for the May 2003 freeze of the C. elegans genome from
WormBase (ftp://ftp.sanger.ac.uk/pub/wormbase/WS100/CHROMOSOMES/).
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=ce1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
-----------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu,
then go to the directory goldenPath/ceMay2003/database/. To download
multiple files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
------------------------------------------------------------------
All the tables in this directory are freely usable for any purpose
except for the following:
softberryGene.txt and softberryPep.txt - Free for academic
and nonprofit use. Commercial users please contact
Softberry Inc. at http://www.softberry.com.
The C. elegans sequence is made freely available to the community by the
Genome Sequencing Center at the WUSTL School of Medicine. Please see the
WUSTL data use policy at http://genome.wustl.edu/data.cgi for data use
restrictions and citation information.
Name Last modified Size Description
Parent Directory -
wabaCbr.sql 2013-10-01 12:48 825
twinscanPep.sql 2013-10-01 12:48 337
twinscan.sql 2013-10-01 12:48 755
tissue.sql 2013-10-01 12:48 332
source.sql 2013-10-01 12:48 332
softberryPep.sql 2013-10-01 12:48 332
softberryHom.sql 2013-10-01 12:48 381
softberryGene.sql 2013-10-01 12:48 752
simpleRepeat.sql 2013-10-01 12:48 1.1K
sex.sql 2013-10-01 12:48 326
seq.sql 2013-10-01 12:48 588
sangerToRefSeq.sql 2013-10-01 12:48 381
sangerToPfam.sql 2013-10-01 12:48 377
sangerToKim.sql 2013-10-01 12:48 375
sangerPep.sql 2013-10-01 12:48 326
sangerLinks.sql 2013-10-01 12:48 419
sangerIsoforms.sql 2013-10-01 12:48 405
sangerGene.sql 2013-10-01 12:48 824
sangerCanonical.sql 2013-10-01 12:48 612
sangerBlastTab.sql 2013-10-01 12:48 808
refSeqStatus.sql 2013-10-01 12:48 350
refSeqAli.sql 2013-10-01 12:48 1.3K
refMrna.sql 2013-10-01 12:48 329
refLink.sql 2013-10-01 12:48 802
refGene.sql 2013-10-01 12:48 753
refFlat.sql 2013-10-01 12:48 769
productName.sql 2013-10-01 12:48 342
organism.sql 2013-10-01 12:48 336
orfToGene.sql 2013-10-01 12:48 364
mrnaClone.sql 2013-10-01 12:48 338
miRNA.sql 2013-10-01 12:48 776
library.sql 2013-10-01 12:48 334
kimExpDistance.sql 2013-10-01 12:48 392
keyword.sql 2013-10-01 12:48 334
history.sql 2013-10-01 12:48 499
hgFindSpec.sql 2013-10-01 12:48 825
grp.sql 2013-10-01 12:48 358
geneName.sql 2013-10-01 12:48 336
gcPercent.sql 2013-10-01 12:48 544
gbCdnaInfo.sql 2013-10-01 12:48 1.5K
extFile.sql 2013-10-01 12:48 443
development.sql 2013-10-01 12:48 342
description.sql 2013-10-01 12:48 342
chromInfo.sql 2013-10-01 12:48 394
chrX_wabaCbr.sql 2013-10-01 12:48 564
chrX_rmsk.sql 2013-10-01 12:48 1.0K
chrX_mrna.sql 2013-10-01 12:48 1.3K
chrX_gold.sql 2013-10-01 12:48 779
chrX_gap.sql 2013-10-01 12:48 692
chrX_est.sql 2013-10-01 12:48 1.3K
chrX_chainSelfLink.sql 2013-10-01 12:48 575
chrX_chainSelf.sql 2013-10-01 12:48 852
chrX_cb1ChainLink.sql 2013-10-01 12:48 573
chrX_cb1Chain.sql 2013-10-01 12:48 850
chrX_blatFugu.sql 2013-10-01 12:48 1.3K
chrX_blastzSelf.sql 2013-10-01 12:48 1.3K
chrX_blastzCb1.sql 2013-10-01 12:48 1.3K
chrV_wabaCbr.sql 2013-10-01 12:48 564
chrV_rmsk.sql 2013-10-01 12:48 1.0K
chrV_mrna.sql 2013-10-01 12:48 1.3K
chrV_gold.sql 2013-10-01 12:48 779
chrV_gap.sql 2013-10-01 12:48 685
chrV_est.sql 2013-10-01 12:48 1.3K
chrV_chainSelfLink.sql 2013-10-01 12:48 575
chrV_chainSelf.sql 2013-10-01 12:48 852
chrV_cb1ChainLink.sql 2013-10-01 12:48 573
chrV_cb1Chain.sql 2013-10-01 12:48 850
chrV_blatFugu.sql 2013-10-01 12:48 1.3K
chrV_blastzSelf.sql 2013-10-01 12:48 1.3K
chrV_blastzCb1.sql 2013-10-01 12:48 1.3K
chrM_wabaCbr.sql 2013-10-01 12:48 564
chrM_rmsk.sql 2013-10-01 12:48 1.0K
chrM_mrna.sql 2013-10-01 12:48 1.3K
chrM_gold.sql 2013-10-01 12:48 786
chrM_gap.sql 2013-10-01 12:48 709
chrM_est.sql 2013-10-01 12:48 1.3K
chrM_chainSelfLink.sql 2013-10-01 12:48 575
chrM_chainSelf.sql 2013-10-01 12:48 852
chrM_cb1ChainLink.sql 2013-10-01 12:48 573
chrM_cb1Chain.sql 2013-10-01 12:48 850
chrM_blatFugu.sql 2013-10-01 12:48 1.3K
chrM_blastzSelf.sql 2013-10-01 12:48 1.3K
chrM_blastzCb1.sql 2013-10-01 12:48 1.3K
chrI_wabaCbr.sql 2013-10-01 12:48 564
chrI_rmsk.sql 2013-10-01 12:48 1.0K
chrI_mrna.sql 2013-10-01 12:48 1.3K
chrI_gold.sql 2013-10-01 12:48 779
chrI_gap.sql 2013-10-01 12:48 692
chrI_est.sql 2013-10-01 12:48 1.3K
chrI_chainSelfLink.sql 2013-10-01 12:48 575
chrI_chainSelf.sql 2013-10-01 12:48 852
chrI_cb1ChainLink.sql 2013-10-01 12:48 573
chrI_cb1Chain.sql 2013-10-01 12:48 850
chrI_blatFugu.sql 2013-10-01 12:48 1.3K
chrI_blastzSelf.sql 2013-10-01 12:48 1.3K
chrI_blastzCb1.sql 2013-10-01 12:48 1.3K
chrIV_wabaCbr.sql 2013-10-01 12:48 566
chrIV_rmsk.sql 2013-10-01 12:48 1.0K
chrIV_mrna.sql 2013-10-01 12:48 1.3K
chrIV_gold.sql 2013-10-01 12:48 781
chrIV_gap.sql 2013-10-01 12:48 694
chrIV_est.sql 2013-10-01 12:48 1.3K
chrIV_chainSelfLink.sql 2013-10-01 12:48 577
chrIV_chainSelf.sql 2013-10-01 12:48 854
chrIV_cb1ChainLink.sql 2013-10-01 12:48 575
chrIV_cb1Chain.sql 2013-10-01 12:48 852
chrIV_blatFugu.sql 2013-10-01 12:48 1.3K
chrIV_blastzSelf.sql 2013-10-01 12:48 1.3K
chrIV_blastzCb1.sql 2013-10-01 12:48 1.3K
chrII_wabaCbr.sql 2013-10-01 12:48 566
chrII_rmsk.sql 2013-10-01 12:48 1.0K
chrII_mrna.sql 2013-10-01 12:48 1.3K
chrII_gold.sql 2013-10-01 12:48 781
chrII_gap.sql 2013-10-01 12:48 694
chrII_est.sql 2013-10-01 12:48 1.3K
chrII_chainSelfLink.sql 2013-10-01 12:48 577
chrII_chainSelf.sql 2013-10-01 12:48 854
chrII_cb1ChainLink.sql 2013-10-01 12:48 575
chrII_cb1Chain.sql 2013-10-01 12:48 852
chrII_blatFugu.sql 2013-10-01 12:48 1.3K
chrII_blastzSelf.sql 2013-10-01 12:48 1.3K
chrII_blastzCb1.sql 2013-10-01 12:48 1.3K
chrIII_wabaCbr.sql 2013-10-01 12:48 568
chrIII_rmsk.sql 2013-10-01 12:48 1.0K
chrIII_mrna.sql 2013-10-01 12:48 1.3K
chrIII_gold.sql 2013-10-01 12:48 783
chrIII_gap.sql 2013-10-01 12:48 696
chrIII_est.sql 2013-10-01 12:48 1.3K
chrIII_chainSelfLink.sql 2013-10-01 12:48 579
chrIII_chainSelf.sql 2013-10-01 12:48 856
chrIII_cb1ChainLink.sql 2013-10-01 12:48 577
chrIII_cb1Chain.sql 2013-10-01 12:48 854
chrIII_blatFugu.sql 2013-10-01 12:48 1.3K
chrIII_blastzSelf.sql 2013-10-01 12:48 1.3K
chrIII_blastzCb1.sql 2013-10-01 12:48 1.3K
cell.sql 2013-10-01 12:48 328
cds.sql 2013-10-01 12:48 326
author.sql 2013-10-01 12:48 332
all_mrna.sql 2013-10-01 12:48 1.3K
trackDb.txt.gz 2008-07-16 03:14 13K
trackDb.sql 2008-07-16 03:14 2.0K
tableDescriptions.txt.gz 2008-05-18 03:15 6.2K
tableDescriptions.sql 2008-05-18 03:15 1.2K
all_est.txt.gz 2006-09-10 08:45 7.2M
all_est.sql 2006-09-10 08:45 2.1K
genomicSuperDups.txt.gz 2006-07-05 07:02 421K
genomicSuperDups.sql 2006-07-05 07:02 2.5K
hgFindSpec.txt.gz 2005-04-23 05:28 533
grp.txt.gz 2004-10-22 04:25 204
gbCdnaInfo.txt.gz 2004-09-28 10:04 1.8M
refSeqStatus.txt.gz 2004-06-23 04:28 69K
refMrna.txt.gz 2004-05-20 05:15 7.1M
refLink.txt.gz 2004-05-20 05:15 496K
refGene.txt.gz 2004-05-20 05:15 1.1M
twinscan.txt.gz 2004-05-05 05:06 958K
chrX_gap.txt.gz 2004-05-01 05:06 71
chrM_gold.txt.gz 2004-05-01 05:06 64
chrM_gap.txt.gz 2004-05-01 05:06 33
chrI_gap.txt.gz 2004-05-01 05:06 82
chrIV_gap.txt.gz 2004-05-01 05:06 601
chrII_gap.txt.gz 2004-05-01 05:06 93
chrIII_gap.txt.gz 2004-05-01 05:06 161
sangerToPfam.txt.gz 2004-04-17 05:03 69K
twinscanPep.txt.gz 2004-03-24 05:08 4.2M
miRNA.txt.gz 2004-03-20 05:05 2.1K
kimExpDistance.txt.gz 2003-10-30 06:58 118M
sangerLinks.txt.gz 2003-10-30 06:55 550K
sangerCanonical.txt.gz 2003-10-30 06:55 340K
sangerGene.txt.gz 2003-10-30 06:55 1.2M
sangerToRefSeq.txt.gz 2003-10-09 20:19 107K
sangerToKim.txt.gz 2003-10-09 20:19 95K
sangerIsoforms.txt.gz 2003-10-09 20:19 102K
orfToGene.txt.gz 2003-10-09 20:19 98K
sangerBlastTab.txt.gz 2003-10-09 20:19 18M
sangerPep.txt.gz 2003-09-25 08:55 4.8M
softberryPep.txt.gz 2003-08-29 07:24 4.7M
softberryHom.txt.gz 2003-08-29 07:24 352K
softberryGene.txt.gz 2003-08-29 07:24 1.0M
wabaCbr.txt.gz 2003-06-24 13:02 260M
tissue.txt.gz 2003-06-24 12:59 132
source.txt.gz 2003-06-24 12:59 83
simpleRepeat.txt.gz 2003-06-24 12:59 822K
sex.txt.gz 2003-06-24 12:59 140
seq.txt.gz 2003-06-24 12:59 2.7M
refSeqAli.txt.gz 2003-06-24 12:59 1.3M
refFlat.txt.gz 2003-06-24 12:58 1.1M
productName.txt.gz 2003-06-24 12:58 117K
organism.txt.gz 2003-06-24 12:58 65
mrnaClone.txt.gz 2003-06-24 12:58 510K
library.txt.gz 2003-06-24 12:58 8.3K
keyword.txt.gz 2003-06-24 12:58 4.3K
history.txt.gz 2003-06-24 12:58 271
geneName.txt.gz 2003-06-24 12:58 101K
gcPercent.txt.gz 2003-06-24 12:58 26K
extFile.txt.gz 2003-06-24 12:58 159
development.txt.gz 2003-06-24 12:58 318
description.txt.gz 2003-06-24 12:58 23K
chromInfo.txt.gz 2003-06-24 12:58 143
chrX_wabaCbr.txt.gz 2003-06-24 12:58 1.0M
chrX_rmsk.txt.gz 2003-06-24 12:58 263K
chrX_mrna.txt.gz 2003-06-24 12:57 27K
chrX_gold.txt.gz 2003-06-24 12:57 11K
chrX_est.txt.gz 2003-06-24 12:57 825K
chrX_chainSelfLink.txt.gz 2003-06-24 12:57 21M
chrX_chainSelf.txt.gz 2003-06-24 12:55 11M
chrX_cb1ChainLink.txt.gz 2003-06-24 12:54 6.3M
chrX_cb1Chain.txt.gz 2003-06-24 12:54 2.2M
chrX_blatFugu.txt.gz 2003-06-24 12:54 310K
chrX_blastzSelf.txt.gz 2003-06-24 12:53 22M
chrX_blastzCb1.txt.gz 2003-06-24 12:52 7.2M
chrV_wabaCbr.txt.gz 2003-06-24 12:51 1.8M
chrV_rmsk.txt.gz 2003-06-24 12:51 428K
chrV_mrna.txt.gz 2003-06-24 12:51 20K
chrV_gold.txt.gz 2003-06-24 12:51 12K
chrV_gap.txt.gz 2003-06-24 12:51 33
chrV_est.txt.gz 2003-06-24 12:51 950K
chrV_chainSelfLink.txt.gz 2003-06-24 12:50 50M
chrV_chainSelf.txt.gz 2003-06-24 12:49 21M
chrV_cb1ChainLink.txt.gz 2003-06-24 12:48 15M
chrV_cb1Chain.txt.gz 2003-06-24 12:48 6.4M
chrV_blatFugu.txt.gz 2003-06-24 12:48 223K
chrV_blastzSelf.txt.gz 2003-06-24 12:46 55M
chrV_blastzCb1.txt.gz 2003-06-24 12:45 18M
chrM_wabaCbr.txt.gz 2003-06-24 12:45 412
chrM_rmsk.txt.gz 2003-06-24 12:45 662
chrM_mrna.txt.gz 2003-06-24 12:45 117
chrM_est.txt.gz 2003-06-24 12:45 36K
chrM_chainSelfLink.txt.gz 2003-06-24 12:45 97
chrM_chainSelf.txt.gz 2003-06-24 12:45 120
chrM_cb1ChainLink.txt.gz 2003-06-24 12:45 2.0K
chrM_cb1Chain.txt.gz 2003-06-24 12:45 391
chrM_blatFugu.txt.gz 2003-06-24 12:45 137
chrM_blastzSelf.txt.gz 2003-06-24 12:45 137
chrM_blastzCb1.txt.gz 2003-06-24 12:45 2.1K
chrI_wabaCbr.txt.gz 2003-06-24 12:45 1.5M
chrI_rmsk.txt.gz 2003-06-24 12:45 391K
chrI_mrna.txt.gz 2003-06-24 12:45 26K
chrI_gold.txt.gz 2003-06-24 12:45 8.0K
chrI_est.txt.gz 2003-06-24 12:45 1.3M
chrI_chainSelfLink.txt.gz 2003-06-24 12:44 44M
chrI_chainSelf.txt.gz 2003-06-24 12:43 16M
chrI_cb1ChainLink.txt.gz 2003-06-24 12:42 10M
chrI_cb1Chain.txt.gz 2003-06-24 12:42 4.3M
chrI_blatFugu.txt.gz 2003-06-24 12:42 214K
chrI_blastzSelf.txt.gz 2003-06-24 12:41 47M
chrI_blastzCb1.txt.gz 2003-06-24 12:40 12M
chrIV_wabaCbr.txt.gz 2003-06-24 12:40 2.5M
chrIV_rmsk.txt.gz 2003-06-24 12:40 358K
chrIV_mrna.txt.gz 2003-06-24 12:40 21K
chrIV_gold.txt.gz 2003-06-24 12:40 8.7K
chrIV_est.txt.gz 2003-06-24 12:40 1.0M
chrIV_chainSelfLink.txt.gz 2003-06-24 12:39 39M
chrIV_chainSelf.txt.gz 2003-06-24 12:38 16M
chrIV_cb1ChainLink.txt.gz 2003-06-24 12:38 14M
chrIV_cb1Chain.txt.gz 2003-06-24 12:38 5.6M
chrIV_blatFugu.txt.gz 2003-06-24 12:38 228K
chrIV_blastzSelf.txt.gz 2003-06-24 12:37 41M
chrIV_blastzCb1.txt.gz 2003-06-24 12:36 16M
chrII_wabaCbr.txt.gz 2003-06-24 12:36 1.6M
chrII_rmsk.txt.gz 2003-06-24 12:36 329K
chrII_mrna.txt.gz 2003-06-24 12:36 17K
chrII_gold.txt.gz 2003-06-24 12:36 8.7K
chrII_est.txt.gz 2003-06-24 12:36 1.0M
chrII_chainSelfLink.txt.gz 2003-06-24 12:35 40M
chrII_chainSelf.txt.gz 2003-06-24 12:34 16M
chrII_cb1ChainLink.txt.gz 2003-06-24 12:34 12M
chrII_cb1Chain.txt.gz 2003-06-24 12:33 5.0M
chrII_blatFugu.txt.gz 2003-06-24 12:33 172K
chrII_blastzSelf.txt.gz 2003-06-24 12:33 42M
chrII_blastzCb1.txt.gz 2003-06-24 12:32 13M
chrIII_wabaCbr.txt.gz 2003-06-24 12:32 2.2M
chrIII_rmsk.txt.gz 2003-06-24 12:32 370K
chrIII_mrna.txt.gz 2003-06-24 12:32 25K
chrIII_gold.txt.gz 2003-06-24 12:32 6.9K
chrIII_est.txt.gz 2003-06-24 12:32 1.1M
chrIII_chainSelfLink.txt.gz 2003-06-24 12:31 56M
chrIII_chainSelf.txt.gz 2003-06-24 12:29 22M
chrIII_cb1ChainLink.txt.gz 2003-06-24 12:28 13M
chrIII_cb1Chain.txt.gz 2003-06-24 12:27 5.5M
chrIII_blatFugu.txt.gz 2003-06-24 12:27 219K
chrIII_blastzSelf.txt.gz 2003-06-24 12:24 59M
chrIII_blastzCb1.txt.gz 2003-06-24 12:22 15M
cell.txt.gz 2003-06-24 12:22 44
cds.txt.gz 2003-06-24 12:22 20K
author.txt.gz 2003-06-24 12:22 30K
all_mrna.txt.gz 2003-06-24 12:22 137K