This directory contains a dump of the UCSC genome annotation
database for the May 2003 freeze of the C. elegans genome from
WormBase (ftp://ftp.sanger.ac.uk/pub/wormbase/WS100/CHROMOSOMES/).
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=ce1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
-----------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu,
then go to the directory goldenPath/ceMay2003/database/. To download
multiple files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
------------------------------------------------------------------
All the tables in this directory are freely usable for any purpose
except for the following:
softberryGene.txt and softberryPep.txt - Free for academic
and nonprofit use. Commercial users please contact
Softberry Inc. at http://www.softberry.com.
The C. elegans sequence is made freely available to the community by the
Genome Sequencing Center at the WUSTL School of Medicine. Please see the
WUSTL data use policy at http://genome.wustl.edu/data.cgi for data use
restrictions and citation information.
Name Last modified Size Description
Parent Directory -
all_mrna.txt.gz 2003-06-24 12:22 137K
author.txt.gz 2003-06-24 12:22 30K
cds.txt.gz 2003-06-24 12:22 20K
cell.txt.gz 2003-06-24 12:22 44
chrIII_blastzCb1.txt.gz 2003-06-24 12:22 15M
chrIII_blastzSelf.txt.gz 2003-06-24 12:24 59M
chrIII_blatFugu.txt.gz 2003-06-24 12:27 219K
chrIII_cb1Chain.txt.gz 2003-06-24 12:27 5.5M
chrIII_cb1ChainLink.txt.gz 2003-06-24 12:28 13M
chrIII_chainSelf.txt.gz 2003-06-24 12:29 22M
chrIII_chainSelfLink.txt.gz 2003-06-24 12:31 56M
chrIII_est.txt.gz 2003-06-24 12:32 1.1M
chrIII_gold.txt.gz 2003-06-24 12:32 6.9K
chrIII_mrna.txt.gz 2003-06-24 12:32 25K
chrIII_rmsk.txt.gz 2003-06-24 12:32 370K
chrIII_wabaCbr.txt.gz 2003-06-24 12:32 2.2M
chrII_blastzCb1.txt.gz 2003-06-24 12:32 13M
chrII_blastzSelf.txt.gz 2003-06-24 12:33 42M
chrII_blatFugu.txt.gz 2003-06-24 12:33 172K
chrII_cb1Chain.txt.gz 2003-06-24 12:33 5.0M
chrII_cb1ChainLink.txt.gz 2003-06-24 12:34 12M
chrII_chainSelf.txt.gz 2003-06-24 12:34 16M
chrII_chainSelfLink.txt.gz 2003-06-24 12:35 40M
chrII_est.txt.gz 2003-06-24 12:36 1.0M
chrII_gold.txt.gz 2003-06-24 12:36 8.7K
chrII_mrna.txt.gz 2003-06-24 12:36 17K
chrII_rmsk.txt.gz 2003-06-24 12:36 329K
chrII_wabaCbr.txt.gz 2003-06-24 12:36 1.6M
chrIV_blastzCb1.txt.gz 2003-06-24 12:36 16M
chrIV_blastzSelf.txt.gz 2003-06-24 12:37 41M
chrIV_blatFugu.txt.gz 2003-06-24 12:38 228K
chrIV_cb1Chain.txt.gz 2003-06-24 12:38 5.6M
chrIV_cb1ChainLink.txt.gz 2003-06-24 12:38 14M
chrIV_chainSelf.txt.gz 2003-06-24 12:38 16M
chrIV_chainSelfLink.txt.gz 2003-06-24 12:39 39M
chrIV_est.txt.gz 2003-06-24 12:40 1.0M
chrIV_gold.txt.gz 2003-06-24 12:40 8.7K
chrIV_mrna.txt.gz 2003-06-24 12:40 21K
chrIV_rmsk.txt.gz 2003-06-24 12:40 358K
chrIV_wabaCbr.txt.gz 2003-06-24 12:40 2.5M
chrI_blastzCb1.txt.gz 2003-06-24 12:40 12M
chrI_blastzSelf.txt.gz 2003-06-24 12:41 47M
chrI_blatFugu.txt.gz 2003-06-24 12:42 214K
chrI_cb1Chain.txt.gz 2003-06-24 12:42 4.3M
chrI_cb1ChainLink.txt.gz 2003-06-24 12:42 10M
chrI_chainSelf.txt.gz 2003-06-24 12:43 16M
chrI_chainSelfLink.txt.gz 2003-06-24 12:44 44M
chrI_est.txt.gz 2003-06-24 12:45 1.3M
chrI_gold.txt.gz 2003-06-24 12:45 8.0K
chrI_mrna.txt.gz 2003-06-24 12:45 26K
chrI_rmsk.txt.gz 2003-06-24 12:45 391K
chrI_wabaCbr.txt.gz 2003-06-24 12:45 1.5M
chrM_blastzCb1.txt.gz 2003-06-24 12:45 2.1K
chrM_blastzSelf.txt.gz 2003-06-24 12:45 137
chrM_blatFugu.txt.gz 2003-06-24 12:45 137
chrM_cb1Chain.txt.gz 2003-06-24 12:45 391
chrM_cb1ChainLink.txt.gz 2003-06-24 12:45 2.0K
chrM_chainSelf.txt.gz 2003-06-24 12:45 120
chrM_chainSelfLink.txt.gz 2003-06-24 12:45 97
chrM_est.txt.gz 2003-06-24 12:45 36K
chrM_mrna.txt.gz 2003-06-24 12:45 117
chrM_rmsk.txt.gz 2003-06-24 12:45 662
chrM_wabaCbr.txt.gz 2003-06-24 12:45 412
chrV_blastzCb1.txt.gz 2003-06-24 12:45 18M
chrV_blastzSelf.txt.gz 2003-06-24 12:46 55M
chrV_blatFugu.txt.gz 2003-06-24 12:48 223K
chrV_cb1Chain.txt.gz 2003-06-24 12:48 6.4M
chrV_cb1ChainLink.txt.gz 2003-06-24 12:48 15M
chrV_chainSelf.txt.gz 2003-06-24 12:49 21M
chrV_chainSelfLink.txt.gz 2003-06-24 12:50 50M
chrV_est.txt.gz 2003-06-24 12:51 950K
chrV_gap.txt.gz 2003-06-24 12:51 33
chrV_gold.txt.gz 2003-06-24 12:51 12K
chrV_mrna.txt.gz 2003-06-24 12:51 20K
chrV_rmsk.txt.gz 2003-06-24 12:51 428K
chrV_wabaCbr.txt.gz 2003-06-24 12:51 1.8M
chrX_blastzCb1.txt.gz 2003-06-24 12:52 7.2M
chrX_blastzSelf.txt.gz 2003-06-24 12:53 22M
chrX_blatFugu.txt.gz 2003-06-24 12:54 310K
chrX_cb1Chain.txt.gz 2003-06-24 12:54 2.2M
chrX_cb1ChainLink.txt.gz 2003-06-24 12:54 6.3M
chrX_chainSelf.txt.gz 2003-06-24 12:55 11M
chrX_chainSelfLink.txt.gz 2003-06-24 12:57 21M
chrX_est.txt.gz 2003-06-24 12:57 825K
chrX_gold.txt.gz 2003-06-24 12:57 11K
chrX_mrna.txt.gz 2003-06-24 12:57 27K
chrX_rmsk.txt.gz 2003-06-24 12:58 263K
chrX_wabaCbr.txt.gz 2003-06-24 12:58 1.0M
chromInfo.txt.gz 2003-06-24 12:58 143
description.txt.gz 2003-06-24 12:58 23K
development.txt.gz 2003-06-24 12:58 318
extFile.txt.gz 2003-06-24 12:58 159
gcPercent.txt.gz 2003-06-24 12:58 26K
geneName.txt.gz 2003-06-24 12:58 101K
history.txt.gz 2003-06-24 12:58 271
keyword.txt.gz 2003-06-24 12:58 4.3K
library.txt.gz 2003-06-24 12:58 8.3K
mrnaClone.txt.gz 2003-06-24 12:58 510K
organism.txt.gz 2003-06-24 12:58 65
productName.txt.gz 2003-06-24 12:58 117K
refFlat.txt.gz 2003-06-24 12:58 1.1M
refSeqAli.txt.gz 2003-06-24 12:59 1.3M
seq.txt.gz 2003-06-24 12:59 2.7M
sex.txt.gz 2003-06-24 12:59 140
simpleRepeat.txt.gz 2003-06-24 12:59 822K
source.txt.gz 2003-06-24 12:59 83
tissue.txt.gz 2003-06-24 12:59 132
wabaCbr.txt.gz 2003-06-24 13:02 260M
softberryGene.txt.gz 2003-08-29 07:24 1.0M
softberryHom.txt.gz 2003-08-29 07:24 352K
softberryPep.txt.gz 2003-08-29 07:24 4.7M
sangerPep.txt.gz 2003-09-25 08:55 4.8M
sangerBlastTab.txt.gz 2003-10-09 20:19 18M
orfToGene.txt.gz 2003-10-09 20:19 98K
sangerIsoforms.txt.gz 2003-10-09 20:19 102K
sangerToKim.txt.gz 2003-10-09 20:19 95K
sangerToRefSeq.txt.gz 2003-10-09 20:19 107K
sangerGene.txt.gz 2003-10-30 06:55 1.2M
sangerCanonical.txt.gz 2003-10-30 06:55 340K
sangerLinks.txt.gz 2003-10-30 06:55 550K
kimExpDistance.txt.gz 2003-10-30 06:58 118M
miRNA.txt.gz 2004-03-20 05:05 2.1K
twinscanPep.txt.gz 2004-03-24 05:08 4.2M
sangerToPfam.txt.gz 2004-04-17 05:03 69K
chrIII_gap.txt.gz 2004-05-01 05:06 161
chrII_gap.txt.gz 2004-05-01 05:06 93
chrIV_gap.txt.gz 2004-05-01 05:06 601
chrI_gap.txt.gz 2004-05-01 05:06 82
chrM_gap.txt.gz 2004-05-01 05:06 33
chrM_gold.txt.gz 2004-05-01 05:06 64
chrX_gap.txt.gz 2004-05-01 05:06 71
twinscan.txt.gz 2004-05-05 05:06 958K
refGene.txt.gz 2004-05-20 05:15 1.1M
refLink.txt.gz 2004-05-20 05:15 496K
refMrna.txt.gz 2004-05-20 05:15 7.1M
refSeqStatus.txt.gz 2004-06-23 04:28 69K
gbCdnaInfo.txt.gz 2004-09-28 10:04 1.8M
grp.txt.gz 2004-10-22 04:25 204
hgFindSpec.txt.gz 2005-04-23 05:28 533
genomicSuperDups.sql 2006-07-05 07:02 2.5K
genomicSuperDups.txt.gz 2006-07-05 07:02 421K
all_est.sql 2006-09-10 08:45 2.1K
all_est.txt.gz 2006-09-10 08:45 7.2M
tableDescriptions.sql 2008-05-18 03:15 1.2K
tableDescriptions.txt.gz 2008-05-18 03:15 6.2K
trackDb.sql 2008-07-16 03:14 2.0K
trackDb.txt.gz 2008-07-16 03:14 13K
all_mrna.sql 2013-10-01 12:48 1.3K
author.sql 2013-10-01 12:48 332
cds.sql 2013-10-01 12:48 326
cell.sql 2013-10-01 12:48 328
chrIII_blastzCb1.sql 2013-10-01 12:48 1.3K
chrIII_blastzSelf.sql 2013-10-01 12:48 1.3K
chrIII_blatFugu.sql 2013-10-01 12:48 1.3K
chrIII_cb1Chain.sql 2013-10-01 12:48 854
chrIII_cb1ChainLink.sql 2013-10-01 12:48 577
chrIII_chainSelf.sql 2013-10-01 12:48 856
chrIII_chainSelfLink.sql 2013-10-01 12:48 579
chrIII_est.sql 2013-10-01 12:48 1.3K
chrIII_gap.sql 2013-10-01 12:48 696
chrIII_gold.sql 2013-10-01 12:48 783
chrIII_mrna.sql 2013-10-01 12:48 1.3K
chrIII_rmsk.sql 2013-10-01 12:48 1.0K
chrIII_wabaCbr.sql 2013-10-01 12:48 568
chrII_blastzCb1.sql 2013-10-01 12:48 1.3K
chrII_blastzSelf.sql 2013-10-01 12:48 1.3K
chrII_blatFugu.sql 2013-10-01 12:48 1.3K
chrII_cb1Chain.sql 2013-10-01 12:48 852
chrII_cb1ChainLink.sql 2013-10-01 12:48 575
chrII_chainSelf.sql 2013-10-01 12:48 854
chrII_chainSelfLink.sql 2013-10-01 12:48 577
chrII_est.sql 2013-10-01 12:48 1.3K
chrII_gap.sql 2013-10-01 12:48 694
chrII_gold.sql 2013-10-01 12:48 781
chrII_mrna.sql 2013-10-01 12:48 1.3K
chrII_rmsk.sql 2013-10-01 12:48 1.0K
chrII_wabaCbr.sql 2013-10-01 12:48 566
chrIV_blastzCb1.sql 2013-10-01 12:48 1.3K
chrIV_blastzSelf.sql 2013-10-01 12:48 1.3K
chrIV_blatFugu.sql 2013-10-01 12:48 1.3K
chrIV_cb1Chain.sql 2013-10-01 12:48 852
chrIV_cb1ChainLink.sql 2013-10-01 12:48 575
chrIV_chainSelf.sql 2013-10-01 12:48 854
chrIV_chainSelfLink.sql 2013-10-01 12:48 577
chrIV_est.sql 2013-10-01 12:48 1.3K
chrIV_gap.sql 2013-10-01 12:48 694
chrIV_gold.sql 2013-10-01 12:48 781
chrIV_mrna.sql 2013-10-01 12:48 1.3K
chrIV_rmsk.sql 2013-10-01 12:48 1.0K
chrIV_wabaCbr.sql 2013-10-01 12:48 566
chrI_blastzCb1.sql 2013-10-01 12:48 1.3K
chrI_blastzSelf.sql 2013-10-01 12:48 1.3K
chrI_blatFugu.sql 2013-10-01 12:48 1.3K
chrI_cb1Chain.sql 2013-10-01 12:48 850
chrI_cb1ChainLink.sql 2013-10-01 12:48 573
chrI_chainSelf.sql 2013-10-01 12:48 852
chrI_chainSelfLink.sql 2013-10-01 12:48 575
chrI_est.sql 2013-10-01 12:48 1.3K
chrI_gap.sql 2013-10-01 12:48 692
chrI_gold.sql 2013-10-01 12:48 779
chrI_mrna.sql 2013-10-01 12:48 1.3K
chrI_rmsk.sql 2013-10-01 12:48 1.0K
chrI_wabaCbr.sql 2013-10-01 12:48 564
chrM_blastzCb1.sql 2013-10-01 12:48 1.3K
chrM_blastzSelf.sql 2013-10-01 12:48 1.3K
chrM_blatFugu.sql 2013-10-01 12:48 1.3K
chrM_cb1Chain.sql 2013-10-01 12:48 850
chrM_cb1ChainLink.sql 2013-10-01 12:48 573
chrM_chainSelf.sql 2013-10-01 12:48 852
chrM_chainSelfLink.sql 2013-10-01 12:48 575
chrM_est.sql 2013-10-01 12:48 1.3K
chrM_gap.sql 2013-10-01 12:48 709
chrM_gold.sql 2013-10-01 12:48 786
chrM_mrna.sql 2013-10-01 12:48 1.3K
chrM_rmsk.sql 2013-10-01 12:48 1.0K
chrM_wabaCbr.sql 2013-10-01 12:48 564
chrV_blastzCb1.sql 2013-10-01 12:48 1.3K
chrV_blastzSelf.sql 2013-10-01 12:48 1.3K
chrV_blatFugu.sql 2013-10-01 12:48 1.3K
chrV_cb1Chain.sql 2013-10-01 12:48 850
chrV_cb1ChainLink.sql 2013-10-01 12:48 573
chrV_chainSelf.sql 2013-10-01 12:48 852
chrV_chainSelfLink.sql 2013-10-01 12:48 575
chrV_est.sql 2013-10-01 12:48 1.3K
chrV_gap.sql 2013-10-01 12:48 685
chrV_gold.sql 2013-10-01 12:48 779
chrV_mrna.sql 2013-10-01 12:48 1.3K
chrV_rmsk.sql 2013-10-01 12:48 1.0K
chrV_wabaCbr.sql 2013-10-01 12:48 564
chrX_blastzCb1.sql 2013-10-01 12:48 1.3K
chrX_blastzSelf.sql 2013-10-01 12:48 1.3K
chrX_blatFugu.sql 2013-10-01 12:48 1.3K
chrX_cb1Chain.sql 2013-10-01 12:48 850
chrX_cb1ChainLink.sql 2013-10-01 12:48 573
chrX_chainSelf.sql 2013-10-01 12:48 852
chrX_chainSelfLink.sql 2013-10-01 12:48 575
chrX_est.sql 2013-10-01 12:48 1.3K
chrX_gap.sql 2013-10-01 12:48 692
chrX_gold.sql 2013-10-01 12:48 779
chrX_mrna.sql 2013-10-01 12:48 1.3K
chrX_rmsk.sql 2013-10-01 12:48 1.0K
chrX_wabaCbr.sql 2013-10-01 12:48 564
chromInfo.sql 2013-10-01 12:48 394
description.sql 2013-10-01 12:48 342
development.sql 2013-10-01 12:48 342
extFile.sql 2013-10-01 12:48 443
gbCdnaInfo.sql 2013-10-01 12:48 1.5K
gcPercent.sql 2013-10-01 12:48 544
geneName.sql 2013-10-01 12:48 336
grp.sql 2013-10-01 12:48 358
hgFindSpec.sql 2013-10-01 12:48 825
history.sql 2013-10-01 12:48 499
keyword.sql 2013-10-01 12:48 334
kimExpDistance.sql 2013-10-01 12:48 392
library.sql 2013-10-01 12:48 334
miRNA.sql 2013-10-01 12:48 776
mrnaClone.sql 2013-10-01 12:48 338
orfToGene.sql 2013-10-01 12:48 364
organism.sql 2013-10-01 12:48 336
productName.sql 2013-10-01 12:48 342
refFlat.sql 2013-10-01 12:48 769
refGene.sql 2013-10-01 12:48 753
refLink.sql 2013-10-01 12:48 802
refMrna.sql 2013-10-01 12:48 329
refSeqAli.sql 2013-10-01 12:48 1.3K
refSeqStatus.sql 2013-10-01 12:48 350
sangerBlastTab.sql 2013-10-01 12:48 808
sangerCanonical.sql 2013-10-01 12:48 612
sangerGene.sql 2013-10-01 12:48 824
sangerIsoforms.sql 2013-10-01 12:48 405
sangerLinks.sql 2013-10-01 12:48 419
sangerPep.sql 2013-10-01 12:48 326
sangerToKim.sql 2013-10-01 12:48 375
sangerToPfam.sql 2013-10-01 12:48 377
sangerToRefSeq.sql 2013-10-01 12:48 381
seq.sql 2013-10-01 12:48 588
sex.sql 2013-10-01 12:48 326
simpleRepeat.sql 2013-10-01 12:48 1.1K
softberryGene.sql 2013-10-01 12:48 752
softberryHom.sql 2013-10-01 12:48 381
softberryPep.sql 2013-10-01 12:48 332
source.sql 2013-10-01 12:48 332
tissue.sql 2013-10-01 12:48 332
twinscan.sql 2013-10-01 12:48 755
twinscanPep.sql 2013-10-01 12:48 337
wabaCbr.sql 2013-10-01 12:48 825