This directory contains a dump of the UCSC genome annotation
database for the Mar. 2004 freeze of the C. elegans genome from
WormBase (ftp://ftp.sanger.ac.uk/pub/wormbase/WS120/CHROMOSOMES/).
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=ce2
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
-----------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu,
then go to the directory goldenPath/ce2/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
------------------------------------------------------------------
All the tables in this directory are freely available for public use.
The C. elegans sequence is made freely available to the community by the
Genome Sequencing Center at the WUSTL School of Medicine. Please see the
WUSTL data use policy at http://genome.wustl.edu/data.cgi for data use
restrictions and citation information.
Name Last modified Size Description
Parent Directory -
all_est.sql 2016-06-05 09:18 2.4K
all_est.txt.gz 2016-06-05 09:18 14M
all_mrna.sql 2020-08-21 06:07 2.4K
all_mrna.txt.gz 2020-08-21 06:07 309K
augustusGene.sql 2015-07-26 11:22 1.9K
augustusGene.txt.gz 2015-07-26 11:22 1.3M
axtNetCb1.sql 2013-10-01 12:48 661
axtNetCb1.txt.gz 2004-05-10 10:43 1.6M
bigFiles.sql 2024-11-17 03:33 1.4K
bigFiles.txt.gz 2024-11-17 03:33 33
blastHg16KG.sql 2013-10-01 12:48 1.3K
blastHg16KG.txt.gz 2004-09-28 10:05 600K
blatFr1.sql 2013-10-01 12:48 1.3K
blatFr1.txt.gz 2004-05-10 10:43 1.6M
c_briggsae_pwMaf.sql 2013-10-01 12:48 666
c_briggsae_pwMaf.txt.gz 2004-09-28 10:05 1.6M
chrIII_blastzCb1.sql 2013-10-01 12:48 1.3K
chrIII_blastzCb1.txt.gz 2004-05-10 10:43 10M
chrIII_chainCb1.sql 2013-10-01 12:48 861
chrIII_chainCb1.txt.gz 2004-05-10 10:43 3.6M
chrIII_chainCb1Link.sql 2013-10-01 12:48 584
chrIII_chainCb1Link.txt.gz 2004-05-10 10:43 8.6M
chrIII_chainSelf.sql 2013-10-01 12:48 863
chrIII_chainSelf.txt.gz 2004-05-21 05:06 1.4M
chrIII_chainSelfLink.sql 2013-10-01 12:48 586
chrIII_chainSelfLink.txt.gz 2004-05-21 05:05 11M
chrIII_est.sql 2016-06-05 09:18 2.4K
chrIII_est.txt.gz 2016-06-05 09:18 2.3M
chrIII_gap.sql 2013-10-01 12:48 713
chrIII_gap.txt.gz 2004-05-10 10:44 123
chrIII_gold.sql 2013-10-01 12:48 790
chrIII_gold.txt.gz 2004-05-10 10:44 6.9K
chrIII_intronEst.sql 2016-06-05 09:18 2.4K
chrIII_intronEst.txt.gz 2016-06-05 09:18 1.9M
chrIII_mrna.sql 2020-08-21 06:07 2.4K
chrIII_mrna.txt.gz 2020-08-21 06:07 40K
chrIII_rmsk.sql 2013-10-01 12:48 1.1K
chrIII_rmsk.txt.gz 2004-05-10 10:44 392K
chrIII_wabaCbr.sql 2013-10-01 12:48 575
chrIII_wabaCbr.txt.gz 2004-05-10 10:44 2.2M
chrII_blastzCb1.sql 2013-10-01 12:48 1.3K
chrII_blastzCb1.txt.gz 2004-05-10 10:44 10M
chrII_chainCb1.sql 2013-10-01 12:48 859
chrII_chainCb1.txt.gz 2004-05-10 10:44 3.5M
chrII_chainCb1Link.sql 2013-10-01 12:48 582
chrII_chainCb1Link.txt.gz 2004-05-10 10:44 9.1M
chrII_chainSelf.sql 2013-10-01 12:48 861
chrII_chainSelf.txt.gz 2004-05-21 05:06 1.3M
chrII_chainSelfLink.sql 2013-10-01 12:48 584
chrII_chainSelfLink.txt.gz 2004-05-21 05:05 9.3M
chrII_est.sql 2016-06-05 09:18 2.4K
chrII_est.txt.gz 2016-06-05 09:18 2.5M
chrII_gap.sql 2013-10-01 12:48 711
chrII_gap.txt.gz 2004-05-10 10:45 93
chrII_gold.sql 2013-10-01 12:48 788
chrII_gold.txt.gz 2004-05-10 10:45 8.7K
chrII_intronEst.sql 2016-06-05 09:18 2.4K
chrII_intronEst.txt.gz 2016-06-05 09:18 2.1M
chrII_mrna.sql 2020-08-21 06:07 2.4K
chrII_mrna.txt.gz 2020-08-21 06:07 30K
chrII_rmsk.sql 2013-10-01 12:48 1.0K
chrII_rmsk.txt.gz 2004-05-10 10:45 347K
chrII_wabaCbr.sql 2013-10-01 12:48 573
chrII_wabaCbr.txt.gz 2004-05-10 10:45 1.6M
chrIV_blastzCb1.sql 2013-10-01 12:48 1.3K
chrIV_blastzCb1.txt.gz 2004-05-10 10:45 11M
chrIV_chainCb1.sql 2013-10-01 12:48 859
chrIV_chainCb1.txt.gz 2004-05-10 10:45 3.8M
chrIV_chainCb1Link.sql 2013-10-01 12:48 582
chrIV_chainCb1Link.txt.gz 2004-05-10 10:45 10M
chrIV_chainSelf.sql 2013-10-01 12:48 861
chrIV_chainSelf.txt.gz 2004-05-21 05:06 1.3M
chrIV_chainSelfLink.sql 2013-10-01 12:48 584
chrIV_chainSelfLink.txt.gz 2004-05-21 05:05 7.0M
chrIV_est.sql 2016-06-05 09:18 2.4K
chrIV_est.txt.gz 2016-06-05 09:18 2.2M
chrIV_gap.sql 2013-10-01 12:48 711
chrIV_gap.txt.gz 2004-05-10 10:46 34
chrIV_gold.sql 2013-10-01 12:48 788
chrIV_gold.txt.gz 2004-05-10 10:46 8.7K
chrIV_intronEst.sql 2016-06-05 09:18 2.4K
chrIV_intronEst.txt.gz 2016-06-05 09:18 1.7M
chrIV_mrna.sql 2020-08-21 06:07 2.4K
chrIV_mrna.txt.gz 2020-08-21 06:07 112K
chrIV_rmsk.sql 2013-10-01 12:48 1.0K
chrIV_rmsk.txt.gz 2004-05-10 10:46 381K
chrIV_wabaCbr.sql 2013-10-01 12:48 573
chrIV_wabaCbr.txt.gz 2004-05-10 10:46 2.5M
chrI_blastzCb1.sql 2013-10-01 12:48 1.3K
chrI_blastzCb1.txt.gz 2004-05-10 10:46 9.6M
chrI_chainCb1.sql 2013-10-01 12:48 857
chrI_chainCb1.txt.gz 2004-05-10 10:46 3.2M
chrI_chainCb1Link.sql 2013-10-01 12:48 571
chrI_chainCb1Link.txt.gz 2004-06-01 07:23 8.2M
chrI_chainSelf.sql 2013-10-01 12:48 859
chrI_chainSelf.txt.gz 2004-05-21 05:06 1.1M
chrI_chainSelfLink.sql 2013-10-01 12:48 582
chrI_chainSelfLink.txt.gz 2004-05-21 05:05 7.9M
chrI_est.sql 2016-06-05 09:18 2.4K
chrI_est.txt.gz 2016-06-05 09:18 2.9M
chrI_gap.sql 2013-10-01 12:48 709
chrI_gap.txt.gz 2004-05-10 10:46 33
chrI_gold.sql 2013-10-01 12:48 786
chrI_gold.txt.gz 2004-05-10 10:46 7.9K
chrI_intronEst.sql 2016-06-05 09:18 2.4K
chrI_intronEst.txt.gz 2016-06-05 09:18 2.1M
chrI_mrna.sql 2020-05-07 17:18 2.4K
chrI_mrna.txt.gz 2020-05-07 17:18 40K
chrI_rmsk.sql 2013-10-01 12:48 1.0K
chrI_rmsk.txt.gz 2004-05-10 10:46 409K
chrI_wabaCbr.sql 2013-10-01 12:48 571
chrI_wabaCbr.txt.gz 2004-05-10 10:46 1.5M
chrM_blastzCb1.sql 2013-10-01 12:48 1.3K
chrM_blastzCb1.txt.gz 2004-05-10 10:47 2.1K
chrM_chainCb1.sql 2013-10-01 12:48 857
chrM_chainCb1.txt.gz 2004-05-10 10:47 393
chrM_chainCb1Link.sql 2013-10-01 12:48 580
chrM_chainCb1Link.txt.gz 2004-05-10 10:47 2.0K
chrM_est.sql 2016-06-05 09:18 2.4K
chrM_est.txt.gz 2016-06-05 09:18 50K
chrM_gap.sql 2013-10-01 12:48 709
chrM_gap.txt.gz 2004-05-10 10:47 33
chrM_gold.sql 2013-10-01 12:48 786
chrM_gold.txt.gz 2004-05-10 10:47 64
chrM_intronEst.sql 2008-03-18 03:55 2.2K
chrM_intronEst.txt.gz 2008-03-18 03:55 39
chrM_mrna.sql 2008-03-18 03:55 2.2K
chrM_mrna.txt.gz 2008-03-18 03:55 34
chrM_rmsk.sql 2013-10-01 12:48 1.0K
chrM_rmsk.txt.gz 2004-05-10 10:47 662
chrM_wabaCbr.sql 2013-10-01 12:48 571
chrM_wabaCbr.txt.gz 2004-05-10 10:47 412
chrV_blastzCb1.sql 2013-10-01 12:48 1.3K
chrV_blastzCb1.txt.gz 2004-05-10 10:47 15M
chrV_chainCb1.sql 2013-10-01 12:48 857
chrV_chainCb1.txt.gz 2004-05-10 10:47 5.2M
chrV_chainCb1Link.sql 2013-10-01 12:48 580
chrV_chainCb1Link.txt.gz 2004-05-10 10:47 13M
chrV_chainSelf.sql 2013-10-01 12:48 859
chrV_chainSelf.txt.gz 2004-05-21 05:06 1.5M
chrV_chainSelfLink.sql 2013-10-01 12:48 582
chrV_chainSelfLink.txt.gz 2004-05-21 05:06 10M
chrV_est.sql 2016-06-05 09:18 2.4K
chrV_est.txt.gz 2016-06-05 09:18 2.2M
chrV_gap.sql 2013-10-01 12:48 709
chrV_gap.txt.gz 2004-05-10 10:48 33
chrV_gold.sql 2013-10-01 12:48 786
chrV_gold.txt.gz 2004-05-10 10:48 12K
chrV_intronEst.sql 2016-06-05 09:18 2.4K
chrV_intronEst.txt.gz 2016-06-05 09:18 1.8M
chrV_mrna.sql 2018-01-07 06:38 2.4K
chrV_mrna.txt.gz 2018-01-07 06:38 40K
chrV_rmsk.sql 2013-10-01 12:48 1.0K
chrV_rmsk.txt.gz 2004-05-10 10:48 456K
chrV_wabaCbr.sql 2013-10-01 12:48 571
chrV_wabaCbr.txt.gz 2004-05-10 10:48 1.8M
chrX_blastzCb1.sql 2013-10-01 12:48 1.3K
chrX_blastzCb1.txt.gz 2004-05-10 10:48 6.0M
chrX_chainCb1.sql 2013-10-01 12:48 857
chrX_chainCb1.txt.gz 2004-05-10 10:48 1.7M
chrX_chainCb1Link.sql 2013-10-01 12:48 580
chrX_chainCb1Link.txt.gz 2004-05-10 10:48 5.3M
chrX_chainSelf.sql 2013-10-01 12:48 859
chrX_chainSelf.txt.gz 2004-05-21 05:06 874K
chrX_chainSelfLink.sql 2013-10-01 12:48 582
chrX_chainSelfLink.txt.gz 2004-05-21 05:06 3.3M
chrX_est.sql 2016-06-05 09:18 2.4K
chrX_est.txt.gz 2016-06-05 09:18 1.8M
chrX_gap.sql 2013-10-01 12:48 709
chrX_gap.txt.gz 2004-05-10 10:48 33
chrX_gold.sql 2013-10-01 12:48 786
chrX_gold.txt.gz 2004-05-10 10:48 11K
chrX_intronEst.sql 2016-06-05 09:18 2.4K
chrX_intronEst.txt.gz 2016-06-05 09:18 1.4M
chrX_mrna.sql 2020-08-21 06:07 2.4K
chrX_mrna.txt.gz 2020-08-21 06:07 47K
chrX_rmsk.sql 2013-10-01 12:48 1.0K
chrX_rmsk.txt.gz 2004-05-10 10:48 289K
chrX_wabaCbr.sql 2013-10-01 12:48 571
chrX_wabaCbr.txt.gz 2004-05-10 10:48 1.0M
chromInfo.sql 2013-10-01 12:48 401
chromInfo.txt.gz 2004-05-10 10:48 140
dmBlastTab.sql 2007-08-30 18:04 1.6K
dmBlastTab.txt.gz 2007-08-30 18:04 111K
drBlastTab.sql 2010-04-04 10:26 1.8K
drBlastTab.txt.gz 2010-04-04 10:26 291K
estOrientInfo.sql 2016-06-05 09:18 1.9K
estOrientInfo.txt.gz 2016-06-05 09:18 4.0M
extFile.sql 2013-10-01 12:48 441
extFile.txt.gz 2004-09-28 10:05 295
gbLoaded.sql 2020-08-21 06:44 1.7K
gbLoaded.txt.gz 2020-08-21 06:44 217K
gc5Base.sql 2013-10-01 12:48 896
gc5Base.txt.gz 2004-05-10 10:48 385K
geneid.sql 2013-10-01 12:48 1.0K
geneid.txt.gz 2005-03-26 05:08 1.3M
geneidPep.sql 2013-10-01 12:48 324
geneidPep.txt.gz 2005-03-26 05:08 4.8M
grp.sql 2014-03-02 03:40 1.4K
grp.txt.gz 2014-03-02 03:40 223
hgBlastTab.sql 2007-04-08 09:42 1.6K
hgBlastTab.txt.gz 2007-04-08 09:42 121K
hgFindSpec.sql 2023-03-28 13:47 1.8K
hgFindSpec.txt.gz 2023-03-28 13:47 1.1K
history.sql 2010-07-04 14:53 1.5K
history.txt.gz 2010-07-04 14:53 1.0K
kimExpDistance.sql 2013-10-01 12:48 390
kimExpDistance.txt.gz 2004-06-07 07:34 118M
miRNA.sql 2013-10-01 12:48 776
miRNA.txt.gz 2004-05-10 10:48 2.3K
microsat.sql 2015-08-23 12:09 1.5K
microsat.txt.gz 2015-08-23 12:09 3.0K
mmBlastTab.sql 2013-10-01 12:48 798
mmBlastTab.txt.gz 2006-05-26 05:31 280K
mrnaOrientInfo.sql 2020-08-21 06:44 1.9K
mrnaOrientInfo.txt.gz 2020-08-21 06:44 828K
netCb1.sql 2013-10-01 12:48 1.3K
netCb1.txt.gz 2004-05-10 10:48 4.4M
orfToGene.sql 2013-10-01 12:48 371
orfToGene.txt.gz 2004-05-10 10:48 103K
phastCons.sql 2013-10-01 12:48 891
phastCons.txt.gz 2004-09-28 10:05 2.3M
phastConsElements.sql 2013-10-01 12:48 651
phastConsElements.txt.gz 2004-09-28 10:05 1.0M
picTar.sql 2013-10-01 12:48 747
picTar.txt.gz 2006-04-28 03:42 117K
refFlat.sql 2020-08-21 06:39 1.9K
refFlat.txt.gz 2020-08-21 06:39 2.1M
refGene.sql 2020-08-21 06:36 1.8K
refGene.txt.gz 2020-08-21 06:36 1.9M
refSeqAli.sql 2020-08-21 06:44 2.4K
refSeqAli.txt.gz 2020-08-21 06:44 2.7M
rnBlastTab.sql 2006-07-22 11:29 1.6K
rnBlastTab.txt.gz 2006-07-22 11:29 236K
rnaCluster.sql 2013-10-01 12:48 953
rnaCluster.txt.gz 2004-05-10 10:48 349K
sangerBlastTab.sql 2013-10-01 12:48 806
sangerBlastTab.txt.gz 2004-06-07 07:35 19M
sangerCanonical.sql 2013-10-01 12:48 610
sangerCanonical.txt.gz 2004-06-07 07:35 341K
sangerGene.sql 2013-10-01 12:48 833
sangerGene.txt.gz 2004-05-27 05:10 1.2M
sangerGenefinder.sql 2013-10-01 12:48 1.1K
sangerGenefinder.txt.gz 2004-05-12 05:11 1.2M
sangerIsoforms.sql 2013-10-01 12:48 403
sangerIsoforms.txt.gz 2004-06-07 07:35 106K
sangerLinks.sql 2013-10-01 12:48 426
sangerLinks.txt.gz 2004-05-27 05:10 539K
sangerPep.sql 2013-10-01 12:48 333
sangerPep.txt.gz 2004-05-27 05:10 4.8M
sangerToKim.sql 2013-10-01 12:48 373
sangerToKim.txt.gz 2004-06-07 07:35 100K
sangerToPfam.sql 2013-10-01 12:48 368
sangerToPfam.txt.gz 2004-06-07 07:35 69K
sangerToRefSeq.sql 2013-10-01 12:48 379
sangerToRefSeq.txt.gz 2004-06-07 07:35 110K
seq.sql 2013-10-01 12:48 596
seq.txt.gz 2004-05-10 10:48 232K
simpleRepeat.sql 2013-10-01 12:48 1.1K
simpleRepeat.txt.gz 2004-05-10 10:48 822K
tableDescriptions.sql 2024-11-16 02:03 1.4K
tableDescriptions.txt.gz 2024-11-16 02:03 6.4K
tableList.sql 2024-11-17 03:33 1.6K
tableList.txt.gz 2024-11-17 03:33 6.5K
trackDb.sql 2023-03-28 13:47 2.1K
trackDb.txt.gz 2023-03-28 13:47 24K
twinscan.sql 2013-10-01 12:48 1.0K
twinscan.txt.gz 2004-05-10 10:48 1.1M
twinscanPep.sql 2013-10-01 12:48 337
twinscanPep.txt.gz 2004-05-10 10:48 4.3M
wabaCbr.sql 2013-10-01 12:48 832
wabaCbr.txt.gz 2004-05-10 10:51 130M
wormP2P.sql 2013-10-01 12:48 353
wormP2P.txt.gz 2005-06-16 04:54 473K
xenoRefFlat.sql 2020-08-21 06:44 1.7K
xenoRefFlat.txt.gz 2020-08-21 06:44 1.5M
xenoRefGene.sql 2020-08-21 06:44 1.9K
xenoRefGene.txt.gz 2020-08-21 06:44 1.7M
xenoRefSeqAli.sql 2020-08-21 06:44 2.1K
xenoRefSeqAli.txt.gz 2020-08-21 06:44 1.7M