This directory contains reciprocal-best netted chains for ce11-ci3.

 - ce11.ci3.rbest.net.gz: ce11-referenced recip.best net to ci3.
 - ce11.ci3.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from ce11 to ci3 through the recip.best net.

 - ci3.ce11.rbest.net.gz: ci3-referenced recip.best net.
 - ci3.ce11.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/*.ce11.ci3.net.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                    Last modified      Size  Description
      Parent Directory                             -   
      axtRBestNet/            2017-03-21 13:01    -   
      md5sum.txt              2017-03-21 12:58  228   
      ci3.ce11.rbest.chain.gz 2017-03-21 12:58  182K  
      ce11.ci3.rbest.net.gz   2017-03-21 12:58  259K  
      ce11.ci3.rbest.chain.gz 2017-03-21 12:58  182K  
      ci3.ce11.rbest.net.gz   2017-03-21 12:58  266K