This file is from:
http://hgdownload.cse.ucsc.edu/goldenPath/ce11/multiz135way/README.txt
This directory contains compressed multiple alignments of the
following assemblies to the C. elegans genome (ce11, Feb. 2013):
These alignments were prepared using the methods described in the
track description file:
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=ce11&g=cons135way
based on the phylogenetic tree: ce11.135way.nh.
Files in this directory:
- ce11.135way.nh - phylogenetic tree used during the multiz multiple
alignment, using the UCSC database name, or sequence name for those
sequences that are not hosted in UCSC databases.
- ce11.135way.scientificName.nh - same as ce11.135way.nh with the sequence
name replaced with the scientific name for the species.
- ce11.135way.taxId.nh - same as ce11.135way.nh with the sequence
name replaced with the NCBI taxonomy identification.
*** NOTE *** This phylogenetic tree was derived from kmers in common counting
between the sequences to obtain a 'distance' matrix, then using the
phylip command 'neighbors' operation for the simple neighbor joining
algorithm to establish this binary tree. This tree is not necessarily
biologically correct, but it does serve as a useful guide tree for the
multiz alignment procedure.
- nameCrossReference.txt - tab separated columns with the different names
- for these sequences and databases, columns:
1. sequence name - UCSC database or scientific name
- sequence names used in MAF files
2. NCBI accession
3. NCBI taxon identifier
4. assembly name
5. scientific name
- sequences - directory of all sequence used for these alignments when the
sequence is not in a UCSC database/browser.
- upstream*.ensGene..maf.gz - alignments of regions upstream of Ensembl genes
- chr*.maf.gz - the multiple alignments on C. elegans for each chromosome
- md5sum.txt - md5 check sums of these files to verify correct download files
The "alignments" directory contains compressed FASTA alignments
for the CDS regions for three gene tracks, ws245Genes, refGene, ensGene,
of the C. elegans genome (ce11, Feb. 2013) aligned to the assemblies.
The chr*.maf.gz files contain all the alignments for the chromosomes
in the C. elegans genome, including additional annotations to indicate gap
context and genomic breaks for the sequence in the underlying
genome assemblies. Note, the compressed data size of these
maf files is 4 Gb, uncompressed is approximately 50 Gb.
The upstream*.*.maf.gz files contain alignments in regions upstream of
annotated transcription starts for Ensembl genes. with annotated 5' UTRs.
These files differ from the standard MAF format: they display
alignments that extend from start to end of the upstream region in
C. elegans, whether or not alignments actually exist. In situations where no
alignments exist or the alignments of one or more species are missing,
dot (".") is used as a placeholder. Multiple regions of an assembly's
sequence may align to a single region in C. elegans; therefore, only the
species name is displayed in the alignment data and no position information
is recorded. The alignment score is always zero in these files.
For a description of multiple alignment format (MAF), see
http://genome.ucsc.edu/goldenPath/help/maf.html.
PhastCons conservation scores for these alignments are available at:
http://hgdownload.cse.ucsc.edu/goldenPath/ce11/phastCons135way
PhyloP conservation scores for these alignments are available at:
http://hgdownload.cse.ucsc.edu/goldenPath/ce11/phyloP135way
---------------------------------------------------------------
Assemblies used in these alignments:
C. elegans - Caenorhabditis elegans
Feb. 2013 (WBcel235/ce11) (reference)
A. ceylanicum - Ancylostoma ceylanicum
Mar. 2014 (WS243/Acey_2013.11.30.genDNA/ancCey1) (net)
Acrobeloides_nanus - Acrobeloides nanus
UNIVERSITY COLLEGE LONDON
Jun. 2018 - GCA_900406225.1 - v1 (net)
Ancylostoma_caninum - Ancylostoma caninum
The Genome Institute
Jul. 2018 - GCA_003336725.1 - A_caninum_9.3.2.ec.cg.pg (net)
Ancylostoma_duodenale - Ancylostoma duodenale
The Genome Institute
Jan. 2015 - GCA_000816745.1 - A_duodenale_2.2.ec.cg.pg (net)
Angiostrongylus_cantonensis - Angiostrongylus cantonensis
University of Malaya
Nov. 2016 - GCA_001884285.1 - ASM188428v1 (net)
Ascaris_suum - Ascaris suum
Genetics and Genome Center, Washington University School of Medicine
Nov. 2017 - GCA_000187025.3 - ASM18702v3 (net)
Barber pole worm - Haemonchus contortus
Jul. 2013 (WormBase WS239/haeCon2) (net)
Brugia_malayi - Brugia malayi
TIGR
Mar. 2008 - GCF_000002995.3 - ASM299v2 (net)
Brugia_pahangi - Brugia pahangi
University Malaya
Sep. 2015 - GCA_001280985.1 - Brugia_pa_1.0 (net)
Bursaphelenchus_xylophilus - Bursaphelenchus xylophilus
Wellcome Trust Sanger insititute
Oct. 2011 - GCA_000231135.1 - ASM23113v1 (net)
C. angaria - Caenorhabditis angaria
Apr. 2012 (WS232/ps1010rel8/caeAng2) (net)
C. brenneri - Caenorhabditis brenneri
Nov. 2010 (C. brenneri 6.0.1b/caePb3) (net)
C. briggsae - Caenorhabditis briggsae
Apr. 2011 (WS225/cb4) (net)
C. intestinalis - Ciona intestinalis
Apr. 2011 (Kyoto KH/ci3) (net)
C. japonica - Caenorhabditis japonica
Aug. 2010 (WUSTL 7.0.1/caeJap4) (net)
C. remanei - Caenorhabditis remanei
Jul. 2007 (WS220/caeRem4) (net)
C. sp. 5 ju800 - Caenorhabditis sp5 ju800
Jan. 2012 (WS230/Caenorhabditis_sp_5-JU800-1.0/caeSp51) (net)
C. tropicalis - Caenorhabditis tropicalis
Nov. 2010 (WS226/WUSTL 3.0.1/caeSp111) (net)
C_briggsae - Caenorhabditis briggsae
The C.briggsae Sequencing Consortium
Jul. 2014 - GCA_000004555.3 - CB4 (net)
C_latens - Caenorhabditis latens
University of Oregon
Aug. 2017 - GCA_002259235.1 - CaeLat1.0 (net)
C_nigoni - Caenorhabditis nigoni
Cornell University
Nov. 2017 - GCA_002742825.1 - nigoni.pc_2016.07.14 (net)
C_sp21_LS_2015 - Caenorhabditis sp. 21 LS-2015
BANG
Aug. 2018 - GCA_900536235.1 - CPARV_v1 (net)
C_sp26_LS_2015 - Caenorhabditis sp. 26 LS-2015
BANG
Aug. 2018 - GCA_900536285.1 - CZANZ_v1 (net)
C_sp31_LS_2015 - Caenorhabditis sp. 31 LS-2015
BANG
Aug. 2018 - GCA_900536295.1 - CUTEL_v1 (net)
C_sp32_LS_2015 - Caenorhabditis sp. 32 LS-2015
BANG
Aug. 2018 - GCA_900536325.1 - CSULS_v1 (net)
C_sp34_TK_2017 - Caenorhabditis sp. 34 TK-2017
University of Miyazaki
Jun. 2017 - GCA_003052745.1 - Sp34_v7 (net)
C_sp38_MB_2015 - Caenorhabditis sp. 38 MB-2015
BANG
Aug. 2018 - GCA_900536415.1 - CQUIO_v1 (net)
C_sp39_LS_2015 - Caenorhabditis sp. 39 LS-2015
BANG
Aug. 2018 - GCA_900536345.1 - CWAIT_v1 (net)
C_sp40_LS_2015 - Caenorhabditis sp. 40 LS-2015
BANG
Aug. 2018 - GCA_900536305.1 - CTRIB_v1 (net)
Clonorchis_sinensis - Clonorchis sinensis
Department of Parasitology, Zhongshan School of Medicine, Sun Yat-sen University
Nov. 2011 - GCA_000236345.1 - C_sinensis-2.0 (net)
Dicrocoelium_dendriticum - Dicrocoelium dendriticum
WTSI
Sep. 2014 - GCA_000950715.1 - D_dendriticum_Leon_v1_0_4 (net)
Dictyocaulus_viviparus - Dictyocaulus viviparus
The Genome Institute
Mar. 2015 - GCA_000816705.1 - D_viviparus_9.2.1.ec.pg (net)
Diploscapter_coronatus - Diploscapter coronatus
NIG
Jun. 2017 - GCA_002207785.1 - ASM220778v1 (net)
Diploscapter_pachys - Diploscapter pachys
New York University
Sep. 2017 - GCA_002287525.1 - DipSp1Ass11Ann3 (net)
Dirofilaria_immitis - Dirofilaria immitis
EDINBURGH
Aug. 2013 - GCA_001077395.1 - ASM107739v1 (net)
Ditylenchus_destructor - Ditylenchus destructor
Huazhong Agricultural University
Mar. 2016 - GCA_001579705.1 - ASM157970v1 (net)
Dog heartworm - Dirofilaria immitis
Sep. 2013 (WS240/D. immitis v2.2/dirImm1) (net)
Dugesia_japonica - Dugesia japonica
University of Oxford
Jan. 2017 - GCA_001938525.1 - Djap_assembly_v1 (net)
Echinococcus_canadensis - Echinococcus canadensis
IMPAM-UBA-CONICET
May 2016 - GCA_900004735.1 - ECANG7 (net)
Echinococcus_granulosus - Echinococcus granulosus
Chinese National Human Genome Center at Shanghai
Jan. 2014 - GCA_000524195.1 - ASM52419v1 (net)
Echinococcus_multilocularis - Echinococcus multilocularis
WTSI
Dec. 2015 - GCA_000469725.3 - EMULTI002 (net)
Elaeophora_elaphi - Elaeophora elaphi
SC
Nov. 2013 - GCA_000499685.1 - EEL001 (net)
Eye worm - Loa loa
Jul. 2012 (WS235/L_loa_Cameroon_isolate/loaLoa1) (net)
Fasciola_gigantica - Fasciola gigantica
North-Eastern Hill University
Jan. 2018 - GCA_002867515.1 - ASM286751v1 (net)
Fasciola_hepatica - Fasciola hepatica
LIV
Apr. 2018 - GCA_900302435.1 - Fasciola_10x_pilon (net)
Filarial worm - Brugia malayi
May. 2014 (WS244/B_malayi-3.1/bruMal2) (net)
Girardia_tigrina - Girardia tigrina
University of Oxford
Jan. 2017 - GCA_001938485.1 - gtig.1 (net)
Globodera_ellingtonae - Globodera ellingtonae
Oregon State University
Sep. 2016 - GCA_001723225.1 - ASM172322v1 (net)
Globodera_pallida - Globodera pallida
WTSI
May 2014 - GCA_000724045.1 - GPAL001 (net)
Globodera_rostochiensis - Globodera rostochiensis
BANG
Apr. 2016 - GCA_900079975.1 - nGr (net)
Gyrodactylus_salaris - Gyrodactylus salaris
Natural History Museum, University of Oslo
Jun. 2014 - GCA_000715275.1 - Gsalaris_v1 (net)
H. bacteriophora/m31e - Heterorhabditis bacteriophora
Aug. 2011 (WS229/H. bacteriophora 7.0/hetBac1) (net)
Haemonchus_contortus - Haemonchus contortus
SC
Aug. 2013 - GCA_000469685.1 - HCON (net)
Heligmosomoides_polygyrus_bakeri - Heligmosomoides polygyrus bakeri
BANG
Sep. 2016 - GCA_900096555.1 - nHp_v2.0 (net)
Heterodera_glycines - Heterodera glycines
Monsanto
Apr. 2008 - GCA_000150805.1 - HG2 (net)
Hymenolepis_microstoma - Hymenolepis microstoma
WTSI
Dec. 2015 - GCA_000469805.2 - HMIC002 (net)
Loa_loa - Loa loa
Broad Institute
Jul. 2012 - GCF_000183805.2 - Loa_loa_V3.1 (net)
M. hapla - Meloidogyne hapla
Sep. 2008 (M. hapla VW9 WS210/melHap1) (net)
M. incognita - Meloidogyne incognita
Feb. 2008 (M. incognita WS245/PRJEA28837/melInc2) (net)
Macrostomum_lignano - Macrostomum lignano
University Medical Center Groningen
Aug. 2017 - GCA_002269645.1 - Mlig_3_7 (net)
Meloidogyne_arenaria - Meloidogyne arenaria
RIKEN
May 2018 - GCA_003133805.1 - ASM313380v1 (net)
Meloidogyne_floridensis - Meloidogyne floridensis
BANG
Jun. 2014 - GCA_000751915.1 - nMf_1_1 (net)
Meloidogyne_graminicola - Meloidogyne graminicola
ICAR-IARI, New Delhi, INDIA
Nov. 2017 - GCA_002778205.1 - Mgraminicola_V1 (net)
Meloidogyne_incognita - Meloidogyne incognita
Genoscope CEA
May 2017 - GCA_900182535.1 - Meloidogyne_incognita_V3 (net)
Meloidogyne_javanica - Meloidogyne javanica
Genoscope CEA
Apr. 2017 - GCA_900003945.1 - ASM90000394v1 (net)
Microworm - Panagrellus redivivus
Feb. 2013 (WS240/Pred3/panRed1) (net)
N. americanus - Necator americanus
Dec. 2013 (WS242/N_americanus_v1/necAme1) (net)
Necator_americanus - Necator americanus
The Genome Institute at Washington University
Dec. 2013 - GCF_000507365.1 - N_americanus_v1 (net)
Nippostrongylus_brasiliensis - Nippostrongylus brasiliensis
Malaghan Institute of Medical Research
Aug. 2017 - GCA_900200055.1 - NbL5_MIMR_Canu1.5 (net)
O. volvulus - Onchocerca volvulus
Nov. 2013 (WS241/O_volvulus_Cameroon_v3/oncVol1) (net)
Oesophagostomum_dentatum - Oesophagostomum dentatum
The Genome Institute
Dec. 2014 - GCA_000797555.1 - O_dentatum_10.0.ec.cg.pg (net)
Onchocerca_flexuosa - Onchocerca flexuosa
The Genome Institute
Aug. 2017 - GCA_002249935.1 - O_flexuosa_1.0.allpaths.pg.lrna (net)
Onchocerca_ochengi - Onchocerca ochengi
WTSI
Mar. 2016 - GCA_000950515.2 - O_ochengi_Ngaoundere (net)
Onchocerca_volvulus - Onchocerca volvulus
SC
Feb. 2014 - GCA_000499405.2 - ASM49940v2 (net)
Opisthorchis_viverrini - Opisthorchis viverrini
The University of Melbourne
Jul. 2014 - GCA_000715545.1 - OpiViv1.0 (net)
Oscheius_MCB - Oscheius sp. MCB
University of the Witwatersrand
Feb. 2015 - GCA_000934875.1 - ASM93487v1 (net)
Oscheius_TEL_2014 - Oscheius sp. TEL-2014
University of the Witwatersrand
Jan. 2016 - GCA_001513535.1 - ASM151353v1 (net)
Oscheius_tipulae - Oscheius tipulae
BANG
May 2017 - GCA_900184235.1 - Oscheius_tipulae_assembly_v2 (net)
P. exspectatus - Pristionchus exspectatus
Mar. 2014 (WS243/P_exspectatus_v1/priExs1) (net)
P. pacificus - Pristionchus pacificus
Aug. 2014 (WS221/P_pacificus-v2/priPac3) (net)
Parapristionchus_giblindavisi - Parapristionchus giblindavisi
MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY
Jun. 2018 - GCA_900491355.1 - Parapristionchus_genome (net)
Parascaris_univalens - Parascaris univalens
University of Colorado School of Medicine
Aug. 2017 - GCA_002259215.1 - ASM225921v1 (net)
Parastrongyloides_trichosuri - Parastrongyloides trichosuri
SC
Sep. 2014 - GCA_000941615.1 - P_trichosuri_KNP (net)
Pig roundworm - Ascaris suum
Sep. 2012 (WS229/AscSuum_1.0/ascSuu1) (net)
Pine wood nematode - Bursaphelenchus xylophilus
Nov. 2011 (WS229/B. xylophilus Ka4C1/burXyl1) (net)
Plectus_sambesii - Plectus sambesii
MRC London Institute of Medical Sciences - Imperial College London
Nov. 2017 - GCA_002796945.1 - Psam_v1.0 (net)
Pristionchus_arcanus - Pristionchus arcanus
MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY
Jun. 2018 - GCA_900490705.1 - P._arcanus_genome (net)
Pristionchus_entomophagus - Pristionchus entomophagus
MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY
Jun. 2018 - GCA_900490825.1 - P._entomophagus_genome (net)
Pristionchus_exspectatus - Pristionchus exspectatus
MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY
May 2018 - GCA_900380275.1 - Pristionchus_exspectatus_de_novo_assembly (net)
Pristionchus_maxplancki - Pristionchus maxplancki
MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY
Jun. 2018 - GCA_900490775.1 - Prisstionchus_maxplancki_genome (net)
Pristionchus_pacificus - Pristionchus pacificus
Washington University (WashU)
Oct. 2017 - GCA_000180635.3 - El_Paco (net)
Rhabditophanes_KR3021 - Rhabditophanes sp. KR3021
WTSI
Sep. 2014 - GCA_000944355.1 - Rhabditophanes_sp_KR3021 (net)
Romanomermis_culicivorax - Romanomermis culicivorax
UZK
Jan. 2014 - GCA_001039655.1 - nRc.2.0 (net)
Rotylenchulus_reniformis - Rotylenchulus reniformis
Mississippi State University
Jun. 2015 - GCA_001026735.1 - RREN1.0 (net)
Schistosoma_haematobium - Schistosoma haematobium
The University of Melbourne
Jun. 2014 - GCA_000699445.1 - SchHae_1.0 (net)
Schistosoma_japonicum - Schistosoma japonicum
Chinese Human Genome Center at Shanghai
Apr. 2009 - GCA_000151775.1 - ASM15177v1 (net)
Schistosoma_mansoni - Schistosoma mansoni
Schistosoma Genome Network
Dec. 2011 - GCA_000237925.2 - ASM23792v2 (net)
Schmidtea_mediterranea - Schmidtea mediterranea
Max Planck Institute of Molecular Cell Biology and Genetics
Oct. 2017 - GCA_002600895.1 - ASM260089v1 (net)
Setaria_digitata - Setaria digitata
SVERIGES LANTBRUKSUNIVERSITET
Jan. 2018 - GCA_900083525.1 - Sdigitata (net)
Setaria_equina - Setaria equina
Beni-Suef University
Mar. 2018 - GCA_003012265.1 - Setequ3.0 (net)
Spirometra_erinaceieuropaei - Spirometra erinaceieuropaei
WTSI
Sep. 2014 - GCA_000951995.1 - S_erinaceieuropaei (net)
Steinernema_carpocapsae - Steinernema carpocapsae
California Institute of Technology
Sep. 2014 - GCA_000757645.1 - S_carpo_v1 (net)
Steinernema_feltiae - Steinernema feltiae
California Institute of Technology
Sep. 2014 - GCA_000757705.1 - S_felt_v1 (net)
Steinernema_glaseri - Steinernema glaseri
California Institute of Technology
Sep. 2014 - GCA_000757755.1 - S_glas_v1 (net)
Steinernema_monticolum - Steinernema monticolum
California Institute of Technology
Dec. 2013 - GCA_000505645.1 - S_monti_v1 (net)
Steinernema_scapterisci - Steinernema scapterisci
California Institute of Technology
Sep. 2014 - GCA_000757745.1 - S_scapt_v1 (net)
Strongyloides_papillosus - Strongyloides papillosus
SC
Nov. 2014 - GCA_000936265.1 - S_papillosus_LIN (net)
Strongyloides_stercoralis - Strongyloides stercoralis
SC
Nov. 2014 - GCA_000947215.1 - S_stercoralis_PV0001 (net)
Strongyloides_venezuelensis - Strongyloides venezuelensis
SC
Jun. 2015 - GCA_001028725.1 - S_venezuelensis_HH1 (net)
Subanguina_moxae - Subanguina moxae
Faculty of medicine, University of Miyazaki
Apr. 2015 - GCA_000981365.1 - SAMX_assembly_v0.8 (net)
Taenia_asiatica - Taenia asiatica
Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences
Sep. 2016 - GCA_001693035.2 - Taenia_asiatica_TASYD01_v1 (net)
Taenia_multiceps - Taenia multiceps
Agricultural Genomics Institute at Shenzhen Chinese Academy of Agricultural Sciences
Jul. 2018 - GCA_001923025.2 - T_multiceps_v2.0 (net)
Taenia_saginata - Taenia saginata
Beijing Institute of Genomics, Chinese Academy of Science
Oct. 2016 - GCA_001693075.2 - ASM169307v2 (net)
Taenia_solium - Taenia solium
Taenia solium Genome Consortium
Nov. 2016 - GCA_001870725.1 - MEX_genome_complete.1-6-13 (net)
Teladorsagia_circumcincta - Teladorsagia circumcincta
The Genome Institute
Sep. 2017 - GCA_002352805.1 - T_circumcincta.14.0.ec.cg.pg (net)
Threadworm - Strongyloides ratti
Sep. 2014 (S. ratti ED321/strRat2) (net)
Toxocara_canis - Toxocara canis
University of Melbourne
Dec. 2014 - GCA_000803305.1 - Toxocara_canis_adult_r1.0 (net)
Trichinella - Trichinella spiralis
Jan. 2011 (WS225/Trichinella_spiralis-3.7.1/triSpi1) (net)
Trichinella_T6 - Trichinella sp. T6
University of Melbourne
Nov. 2015 - GCA_001447435.1 - T6_ISS34_r1.0 (net)
Trichinella_T8 - Trichinella sp. T8
University of Melbourne
Nov. 2015 - GCA_001447745.1 - T8_ISS272_r1.0 (net)
Trichinella_T9 - Trichinella sp. T9
University of Melbourne
Nov. 2015 - GCA_001447505.1 - T9_ISS409_r1.0 (net)
Trichinella_britovi - Trichinella britovi
University of Melbourne
Nov. 2015 - GCA_001447585.1 - T3_ISS120_r1.0 (net)
Trichinella_murrelli - Trichinella murrelli
USDA-ARS
Jul. 2017 - GCA_002221485.1 - ASM222148v1 (net)
Trichinella_nativa - Trichinella nativa
University of Melbourne
Nov. 2015 - GCA_001447565.1 - T2_ISS10_r1.0 (net)
Trichinella_nelsoni - Trichinella nelsoni
University of Melbourne
Nov. 2015 - GCA_001447455.1 - T7_ISS37_r1.0 (net)
Trichinella_papuae - Trichinella papuae
University of Melbourne
Nov. 2015 - GCA_001447755.1 - T10_ISS1980_r1.0 (net)
Trichinella_patagoniensis - Trichinella patagoniensis
University of Melbourne
Nov. 2015 - GCA_001447655.1 - T12_ISS2496_r1.0 (net)
Trichinella_pseudospiralis - Trichinella pseudospiralis
University of Melbourne
Nov. 2015 - GCA_001447725.1 - T4_ISS588_r1.0 (net)
Trichinella_spiralis - Trichinella spiralis
Washington University School of Medicine
Jan. 2011 - GCF_000181795.1 - Trichinella_spiralis-3.7.1 (net)
Trichinella_zimbabwensis - Trichinella zimbabwensis
University of Melbourne
Nov. 2015 - GCA_001447665.1 - T11_ISS1029_r1.0 (net)
Trichuris_muris - Trichuris muris
WTSI
Mar. 2014 - GCA_000612645.1 - TMUE2.2 (net)
Trichuris_trichiura - Trichuris trichiura
SC
Mar. 2014 - GCA_000613005.1 - TTRE2.1 (net)
Whipworm - Trichuris suis
Jul. 2014 (WS243/T. suis DCEP-RM93M male/triSui1) (net)
Wuchereria_bancrofti - Wuchereria bancrofti
Case Western Reserve University
Feb. 2016 - GCA_001555675.1 - Wb_PNG_Genome_assembly_pt22 (net)
---------------------------------------------------------------
To download a large file or multiple files from this directory, we recommend
that you use rsync or ftp rather than downloading the files via our website.
There is approximately 14 Gb of compressed data in this directory,
approximately 100 Gb uncompressed.
Via rsync:
rsync -av --progress \
rsync://hgdownload.cse.ucsc.edu/goldenPath/ce11/multiz135way/ ./
Via FTP:
ftp hgdownload.cse.ucsc.edu
user name: anonymous
password: <your email address>
go to the directory goldenPath/ce11/multiz135way
To download multiple files from the UNIX command line, use the "mget" command.
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
Use the "prompt" command to toggle the interactive mode if you do not want
to be prompted for each file that you download.
---------------------------------------------------------------
All the files in this directory are freely usable for any
purpose. For data use restrictions regarding the individual
genome assemblies, see http://genome.ucsc.edu/goldenPath/credits.html.
Name Last modified Size Description
Parent Directory -
upstream5000.ensGene.maf.gz 2018-12-14 19:16 1.2G
chrV.maf.gz 2018-12-10 10:02 733M
chrIV.maf.gz 2018-12-10 10:02 732M
chrI.maf.gz 2018-12-10 10:01 643M
chrX.maf.gz 2018-12-10 10:01 631M
chrIII.maf.gz 2018-12-10 10:00 603M
chrII.maf.gz 2018-12-10 10:00 575M
upstream2000.ensGene.maf.gz 2018-12-14 18:30 521M
upstream1000.ensGene.maf.gz 2018-12-14 18:00 276M
chrM.maf.gz 2018-12-10 09:52 2.0M
nameCrossReference.txt 2019-01-09 14:53 10K
ce11.135way.scientificName.nh 2018-12-18 10:17 7.4K
ce11.135way.nh 2018-12-18 10:14 6.4K
ce11.135way.taxId.nh 2018-12-18 10:18 5.3K
md5sum.txt 2019-01-09 15:05 383
sequences/ 2018-12-17 09:30 -
alignments/ 2018-12-17 10:36 -