This directory contains sequence for the C. briggsae assembly
(cb1, version cb25.agp8) deposited into Wormbase as of 11 July 2002.
cb1.2bit - contains the complete C. briggsae/cb1 genome sequence
in the 2bit file format. While we are providing the .2bit for
this assembly, we will continue to use the .nib files in
the Genome Browser. Repeats from RepeatMasker and Tandem Repeats
Finder (with period of 12 or less) are shown in lower case; non-repeating
sequence is shown in upper case. The utility program, twoBitToFa (available
from the kent src tree), can be used to extract .fa file(s) from
this file. A pre-compiled version of the command line tool can be
found at:
http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/
See also:
http://genome.ucsc.edu/admin/git.html
http://genome.ucsc.edu/admin/jk-install.html
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If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu,
then go to the directory goldenPath/cbJul2002/sanger/. To download
multiple files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
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The C. briggsae sequence is made freely available to the community by the
Genome Sequencing Center at the WUSTL School of Medicine. Please see the
WUSTL data use policy at http://genome.wustl.edu/data.cgi for data use
restrictions and citation information.
Name Last modified Size Description
Parent Directory -
cb1.2bit.md5 2014-05-07 15:21 43
cb25.agp8.agp.gz 2002-07-11 00:00 148K
cb25.agp8.gff.tar.gz 2003-03-07 16:40 12M
cb25.agp8.supercontigs.fasta.qual.gz 2002-07-11 00:00 14M
cb25.agp8.contigs.fasta.qual.gz 2002-07-11 00:00 14M
cb1.2bit 2014-05-05 13:38 26M
cb25.agp8.fasta.gz 2002-07-11 00:00 30M
cb25.agp8.supercontigs.fasta.gz 2002-07-11 00:00 31M
cb25.agp8.contigs.fasta.gz 2002-07-11 00:00 31M
cb25.agp8.reads.placed.gz 2002-07-11 00:00 34M