This directory contains a dump of the UCSC genome annotation database for the Jan. 2007 freeze of the C. briggsae genome (UCSC version cb3, WUSTL version 1.0). This assembly was produced by Washington University in St. Louis (WUSTL) School of Medicine Genome Sequencing Center. For more information on the C. briggsae genome, see the WUSTL project website at http://genome.wustl.edu/genome.cgi?GENOME=Caenorhabditis+briggsae. The sequence data may also be downloaded from: ftp://genome.wustl.edu/pub/organism/Invertebrates/Caenorhabditis_briggsae/assembly/Caenorhabditis_briggsae-1.0/output/chromosomes/. Files included in this directory (updated nightly): - *.sql files: the MySQL commands used to create the tables. To see descriptions of the tables underlying Genome Browser annotation tracks, select the table in the Table Browser: http://genome.ucsc.edu/cgi-bin/hgTables?db=cb3 and click the "describe table schema" button. There is also a "view table schema" link on the configuration page for each track. - *.txt.gz files: the database tables in a tab-delimited format compressed with gzip. ----------------------------------------------------------------- If you plan to download a large file or multiple files from this directory, we recommend that you use ftp rather than downloading the files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory goldenPath/cb3/database/. To download multiple files, use the "mget" command: mget <filename1> <filename2> ... - or - mget -a (to download all the files in the directory) ------------------------------------------------------------------ All the tables in this directory are freely available for public use. The C. briggsae sequence is made freely available to the community by the Genome Sequencing Center at the WUSTL School of Medicine. Please see the WUSTL data use policy at http://genome.wustl.edu/data.cgi for data use restrictions and citation information.
Name Last modified Size Description
Parent Directory - bigFiles.txt.gz 2024-11-17 03:22 33 bigFiles.sql 2024-11-17 03:22 1.4K tableList.txt.gz 2024-11-17 03:22 9.7K tableList.sql 2024-11-17 03:22 1.6K tableDescriptions.txt.gz 2024-11-16 02:03 5.1K tableDescriptions.sql 2024-11-16 02:03 1.4K hgFindSpec.txt.gz 2023-03-28 13:47 630 hgFindSpec.sql 2023-03-28 13:47 1.8K trackDb.txt.gz 2023-03-28 13:47 24K trackDb.sql 2023-03-28 13:47 2.1K gbLoaded.txt.gz 2020-08-18 13:59 45K gbLoaded.sql 2020-08-18 13:59 1.6K xenoRefSeqAli.txt.gz 2020-08-18 13:59 6.9M xenoRefSeqAli.sql 2020-08-18 13:59 2.1K xenoRefFlat.txt.gz 2020-08-18 13:59 6.1M xenoRefFlat.sql 2020-08-18 13:59 1.7K xenoRefGene.txt.gz 2020-08-18 13:59 6.9M xenoRefGene.sql 2020-08-18 13:59 1.9K xenoMrna.txt.gz 2020-08-18 13:40 58M xenoMrna.sql 2020-08-18 13:40 2.1K all_mrna.txt.gz 2017-01-08 12:14 11K all_mrna.sql 2017-01-08 12:14 2.1K mrnaOrientInfo.txt.gz 2017-01-08 12:11 3.4K mrnaOrientInfo.sql 2017-01-08 12:11 1.8K chrIV_mrna.txt.gz 2017-01-08 12:11 1.1K chrIV_mrna.sql 2017-01-08 12:11 2.1K chrII_mrna.txt.gz 2016-06-05 09:16 2.4K chrII_mrna.sql 2016-06-05 09:16 2.1K all_est.txt.gz 2016-06-05 09:16 130K all_est.sql 2016-06-05 09:16 2.1K estOrientInfo.txt.gz 2016-06-05 09:15 29K estOrientInfo.sql 2016-06-05 09:15 1.8K chrX_est.txt.gz 2016-06-05 09:15 18K chrX_est.sql 2016-06-05 09:15 2.1K chrV_est.txt.gz 2016-06-05 09:15 18K chrV_est.sql 2016-06-05 09:15 2.1K chrUn_est.txt.gz 2016-06-05 09:15 7.1K chrUn_est.sql 2016-06-05 09:15 2.1K chrI_est.txt.gz 2016-06-05 09:15 20K chrI_est.sql 2016-06-05 09:15 2.1K chrIV_random_mrna.txt.gz 2016-06-05 09:15 402 chrIV_random_mrna.sql 2016-06-05 09:15 2.1K chrIV_est.txt.gz 2016-06-05 09:15 23K chrIV_est.sql 2016-06-05 09:15 2.1K chrII_est.txt.gz 2016-06-05 09:15 18K chrII_est.sql 2016-06-05 09:15 2.1K chrIII_est.txt.gz 2016-06-05 09:15 21K chrIII_est.sql 2016-06-05 09:15 2.1K chrX_mrna.txt.gz 2016-05-15 08:01 1.9K chrX_mrna.sql 2016-05-15 08:01 2.1K chrX_intronEst.txt.gz 2016-05-15 08:01 7.3K chrX_intronEst.sql 2016-05-15 08:01 2.1K chrV_random_mrna.txt.gz 2016-05-15 08:01 163 chrV_random_mrna.sql 2016-05-15 08:01 2.1K chrV_random_intronEst.txt.gz 2016-05-15 08:01 591 chrV_random_intronEst.sql 2016-05-15 08:01 2.1K chrV_random_est.txt.gz 2016-05-15 08:01 1.3K chrV_random_est.sql 2016-05-15 08:01 2.1K chrV_mrna.txt.gz 2016-05-15 08:01 869 chrV_mrna.sql 2016-05-15 08:01 2.1K chrV_intronEst.txt.gz 2016-05-15 08:01 8.7K chrV_intronEst.sql 2016-05-15 08:01 2.1K chrUn_mrna.txt.gz 2016-05-15 08:01 409 chrUn_mrna.sql 2016-05-15 08:01 2.1K chrUn_intronEst.txt.gz 2016-05-15 08:01 3.2K chrUn_intronEst.sql 2016-05-15 08:01 2.1K chrM_mrna.txt.gz 2016-05-15 08:01 34 chrM_mrna.sql 2016-05-15 08:01 2.1K chrM_intronEst.txt.gz 2016-05-15 08:01 39 chrM_intronEst.sql 2016-05-15 08:01 2.1K chrM_est.txt.gz 2016-05-15 08:01 488 chrM_est.sql 2016-05-15 08:01 2.1K chrI_random_mrna.txt.gz 2016-05-15 08:01 41 chrI_random_mrna.sql 2016-05-15 08:01 2.1K chrI_random_intronEst.txt.gz 2016-05-15 08:01 1.4K chrI_random_intronEst.sql 2016-05-15 08:01 2.1K chrI_random_est.txt.gz 2016-05-15 08:01 3.2K chrI_random_est.sql 2016-05-15 08:01 2.1K chrI_mrna.txt.gz 2016-05-15 08:01 1.4K chrI_mrna.sql 2016-05-15 08:01 2.1K chrI_intronEst.txt.gz 2016-05-15 08:01 10K chrI_intronEst.sql 2016-05-15 08:01 2.1K chrIV_random_intronEst.txt.gz 2016-05-15 08:01 334 chrIV_random_intronEst.sql 2016-05-15 08:01 2.1K chrIV_random_est.txt.gz 2016-05-15 08:01 370 chrIV_random_est.sql 2016-05-15 08:01 2.1K chrIV_intronEst.txt.gz 2016-05-15 08:01 12K chrIV_intronEst.sql 2016-05-15 08:01 2.1K chrII_random_mrna.txt.gz 2016-05-15 08:01 244 chrII_random_mrna.sql 2016-05-15 08:01 2.1K chrII_random_intronEst.txt.gz 2016-05-15 08:01 882 chrII_random_intronEst.sql 2016-05-15 08:01 2.1K chrII_random_est.txt.gz 2016-05-15 08:01 1.5K chrII_random_est.sql 2016-05-15 08:01 2.1K chrII_intronEst.txt.gz 2016-05-15 08:01 11K chrII_intronEst.sql 2016-05-15 08:01 2.1K chrIII_random_mrna.txt.gz 2016-05-15 08:01 43 chrIII_random_mrna.sql 2016-05-15 08:01 2.1K chrIII_random_intronEst.txt.gz 2016-05-15 08:01 843 chrIII_random_intronEst.sql 2016-05-15 08:01 2.1K chrIII_random_est.txt.gz 2016-05-15 08:01 1.5K chrIII_random_est.sql 2016-05-15 08:01 2.1K chrIII_mrna.txt.gz 2016-05-15 08:01 2.5K chrIII_mrna.sql 2016-05-15 08:01 2.1K chrIII_intronEst.txt.gz 2016-05-15 08:01 11K chrIII_intronEst.sql 2016-05-15 08:01 2.1K microsat.txt.gz 2015-08-23 12:03 8.9K microsat.sql 2015-08-23 12:03 1.5K augustusGene.txt.gz 2015-07-26 11:17 1.4M augustusGene.sql 2015-07-26 11:17 1.9K grp.txt.gz 2014-03-02 03:40 208 grp.sql 2014-03-02 03:40 1.4K tRNAs.txt.gz 2012-04-22 20:09 23K tRNAs.sql 2012-04-22 20:09 1.7K blastCe6SG.txt.gz 2008-08-20 03:16 1.8M blastCe6SG.sql 2008-08-20 03:16 2.1K chrX_chainCe6Link.txt.gz 2008-08-01 03:26 3.6M chrX_chainCe6Link.sql 2008-08-01 03:26 1.4K chrM_chainCe6Link.txt.gz 2008-08-01 03:26 945 chrM_chainCe6Link.sql 2008-08-01 03:26 1.4K chrM_chainCe6.txt.gz 2008-08-01 03:25 178 chrM_chainCe6.sql 2008-08-01 03:25 1.6K chrX_chainCe6.txt.gz 2008-08-01 03:25 493K chrX_chainCe6.sql 2008-08-01 03:25 1.6K chrV_random_chainCe6Link.txt.gz 2008-08-01 03:25 1.3M chrV_random_chainCe6Link.sql 2008-08-01 03:25 1.4K chrIII_chainCe6.txt.gz 2008-08-01 03:25 1.0M chrIII_chainCe6.sql 2008-08-01 03:25 1.7K chrII_random_chainCe6Link.txt.gz 2008-08-01 03:25 416K chrII_random_chainCe6Link.sql 2008-08-01 03:25 1.4K chrII_random_chainCe6.txt.gz 2008-08-01 03:24 71K chrII_random_chainCe6.sql 2008-08-01 03:24 1.7K chrV_chainCe6.txt.gz 2008-08-01 03:24 1.5M chrV_chainCe6.sql 2008-08-01 03:24 1.6K chrI_chainCe6Link.txt.gz 2008-08-01 03:24 2.3M chrI_chainCe6Link.sql 2008-08-01 03:24 1.4K chrII_chainCe6.txt.gz 2008-08-01 03:24 549K chrII_chainCe6.sql 2008-08-01 03:24 1.6K chrIV_random_chainCe6.txt.gz 2008-08-01 03:23 24K chrIV_random_chainCe6.sql 2008-08-01 03:23 1.7K chrIII_chainCe6Link.txt.gz 2008-08-01 03:23 4.7M chrIII_chainCe6Link.sql 2008-08-01 03:23 1.4K chrI_random_chainCe6Link.txt.gz 2008-08-01 03:23 1.5M chrI_random_chainCe6Link.sql 2008-08-01 03:23 1.4K chrV_random_chainCe6.txt.gz 2008-08-01 03:23 333K chrV_random_chainCe6.sql 2008-08-01 03:23 1.7K chrV_chainCe6Link.txt.gz 2008-08-01 03:22 5.9M chrV_chainCe6Link.sql 2008-08-01 03:22 1.4K chrIII_random_chainCe6Link.txt.gz 2008-08-01 03:22 148K chrIII_random_chainCe6Link.sql 2008-08-01 03:22 1.4K netCe6.txt.gz 2008-08-01 03:22 3.7M netCe6.sql 2008-08-01 03:22 2.2K chrI_random_chainCe6.txt.gz 2008-08-01 03:22 405K chrIII_random_chainCe6.txt.gz 2008-08-01 03:22 23K chrIII_random_chainCe6.sql 2008-08-01 03:22 1.7K chrI_random_chainCe6.sql 2008-08-01 03:22 1.7K chrII_chainCe6Link.txt.gz 2008-08-01 03:21 3.2M chrII_chainCe6Link.sql 2008-08-01 03:21 1.4K chrI_chainCe6.txt.gz 2008-08-01 03:21 357K chrI_chainCe6.sql 2008-08-01 03:21 1.6K chrIV_random_chainCe6Link.txt.gz 2008-08-01 03:21 187K chrIV_random_chainCe6Link.sql 2008-08-01 03:21 1.4K chrUn_chainCe6Link.txt.gz 2008-08-01 03:21 2.1M chrUn_chainCe6Link.sql 2008-08-01 03:21 1.4K chrUn_chainCe6.txt.gz 2008-08-01 03:21 724K chrUn_chainCe6.sql 2008-08-01 03:21 1.6K chrIV_chainCe6Link.txt.gz 2008-08-01 03:20 3.6M chrIV_chainCe6Link.sql 2008-08-01 03:20 1.4K chrIV_chainCe6.txt.gz 2008-08-01 03:20 749K chrIV_chainCe6.sql 2008-08-01 03:20 1.6K windowmaskerSdust.txt.gz 2007-08-03 15:43 5.2M windowmaskerSdust.sql 2007-08-03 15:43 1.3K simpleRepeat.txt.gz 2007-08-03 15:43 894K simpleRepeat.sql 2007-08-03 15:43 2.0K netPriPac1.txt.gz 2007-08-03 15:43 888K netPriPac1.sql 2007-08-03 15:43 2.2K netCaeRem2.txt.gz 2007-08-03 15:43 4.3M netCaeRem2.sql 2007-08-03 15:43 2.2K netCaePb1.txt.gz 2007-08-03 15:43 3.5M netCaePb1.sql 2007-08-03 15:43 2.2K history.txt.gz 2007-08-03 15:42 1.3K history.sql 2007-08-03 15:42 1.4K chromInfo.txt.gz 2007-08-03 15:42 176 chromInfo.sql 2007-08-03 15:42 1.2K chrX_rmsk.txt.gz 2007-08-03 15:42 427K chrX_rmsk.sql 2007-08-03 15:42 1.8K chrX_gold.txt.gz 2007-08-03 15:42 417 chrX_gold.sql 2007-08-03 15:42 1.6K chrX_gap.txt.gz 2007-08-03 15:42 286 chrX_gap.sql 2007-08-03 15:42 1.5K chrX_chainPriPac1Link.txt.gz 2007-08-03 15:42 612K chrX_chainPriPac1Link.sql 2007-08-03 15:42 1.4K chrX_chainPriPac1.txt.gz 2007-08-03 15:42 178K chrX_chainPriPac1.sql 2007-08-03 15:42 1.7K chrX_chainCaeRem2Link.txt.gz 2007-08-03 15:41 6.9M chrX_chainCaeRem2Link.sql 2007-08-03 15:41 1.4K chrX_chainCaeRem2.txt.gz 2007-08-03 15:41 1.6M chrX_chainCaeRem2.sql 2007-08-03 15:41 1.7K chrX_chainCaePb1Link.txt.gz 2007-08-03 15:41 3.4M chrX_chainCaePb1Link.sql 2007-08-03 15:41 1.4K chrX_chainCaePb1.txt.gz 2007-08-03 15:41 318K chrX_chainCaePb1.sql 2007-08-03 15:41 1.7K chrV_rmsk.txt.gz 2007-08-03 15:41 431K chrV_rmsk.sql 2007-08-03 15:41 1.8K chrV_random_rmsk.txt.gz 2007-08-03 15:41 78K chrV_random_rmsk.sql 2007-08-03 15:41 1.9K chrV_random_gold.txt.gz 2007-08-03 15:41 199 chrV_random_gold.sql 2007-08-03 15:41 1.6K chrV_random_gap.txt.gz 2007-08-03 15:41 146 chrV_random_gap.sql 2007-08-03 15:41 1.5K chrV_random_chainPriPac1Link.txt.gz 2007-08-03 15:41 81K chrV_random_chainPriPac1Link.sql 2007-08-03 15:41 1.4K chrV_random_chainPriPac1.txt.gz 2007-08-03 15:41 38K chrV_random_chainPriPac1.sql 2007-08-03 15:41 1.7K chrV_random_chainCaeRem2Link.txt.gz 2007-08-03 15:41 2.2M chrV_random_chainCaeRem2Link.sql 2007-08-03 15:41 1.4K chrV_random_chainCaeRem2.txt.gz 2007-08-03 15:41 528K chrV_random_chainCaeRem2.sql 2007-08-03 15:41 1.7K chrV_random_chainCaePb1Link.txt.gz 2007-08-03 15:41 1.0M chrV_random_chainCaePb1Link.sql 2007-08-03 15:41 1.4K chrV_random_chainCaePb1.txt.gz 2007-08-03 15:41 292K chrV_random_chainCaePb1.sql 2007-08-03 15:41 1.7K chrV_gold.txt.gz 2007-08-03 15:41 617 chrV_gold.sql 2007-08-03 15:41 1.6K chrV_gap.txt.gz 2007-08-03 15:41 399 chrV_gap.sql 2007-08-03 15:41 1.5K chrV_chainPriPac1Link.txt.gz 2007-08-03 15:41 674K chrV_chainPriPac1Link.sql 2007-08-03 15:41 1.4K chrV_chainPriPac1.txt.gz 2007-08-03 15:41 247K chrV_chainPriPac1.sql 2007-08-03 15:41 1.7K gc5Base.txt.gz 2007-08-03 15:41 443K gc5Base.sql 2007-08-03 15:41 1.7K chrV_chainCaeRem2Link.txt.gz 2007-08-03 15:41 10M chrV_chainCaeRem2Link.sql 2007-08-03 15:41 1.4K chrV_chainCaeRem2.txt.gz 2007-08-03 15:41 2.9M chrV_chainCaeRem2.sql 2007-08-03 15:41 1.7K chrV_chainCaePb1Link.txt.gz 2007-08-03 15:41 6.4M chrV_chainCaePb1Link.sql 2007-08-03 15:41 1.4K chrV_chainCaePb1.txt.gz 2007-08-03 15:41 1.5M chrV_chainCaePb1.sql 2007-08-03 15:41 1.7K chrUn_rmsk.txt.gz 2007-08-03 15:41 238K chrUn_rmsk.sql 2007-08-03 15:41 1.8K chrUn_gold.txt.gz 2007-08-03 15:41 7.2K chrUn_gold.sql 2007-08-03 15:41 1.6K chrUn_gap.txt.gz 2007-08-03 15:41 4.4K chrUn_gap.sql 2007-08-03 15:41 1.5K chrUn_chainPriPac1Link.txt.gz 2007-08-03 15:40 279K chrUn_chainPriPac1Link.sql 2007-08-03 15:40 1.4K chrUn_chainPriPac1.txt.gz 2007-08-03 15:40 142K chrUn_chainPriPac1.sql 2007-08-03 15:40 1.7K chrUn_chainCaeRem2Link.txt.gz 2007-08-03 15:40 11M chrUn_chainCaeRem2Link.sql 2007-08-03 15:40 1.4K chrUn_chainCaeRem2.txt.gz 2007-08-03 15:40 3.6M chrUn_chainCaeRem2.sql 2007-08-03 15:40 1.7K chrUn_chainCaePb1Link.txt.gz 2007-08-03 15:40 2.0M chrUn_chainCaePb1Link.sql 2007-08-03 15:40 1.4K chrUn_chainCaePb1.txt.gz 2007-08-03 15:40 796K chrUn_chainCaePb1.sql 2007-08-03 15:40 1.7K chrM_rmsk.txt.gz 2007-08-03 15:40 763 chrM_rmsk.sql 2007-08-03 15:40 1.8K chrM_gold.txt.gz 2007-08-03 15:40 67 chrM_gold.sql 2007-08-03 15:40 1.6K chrM_gap.txt.gz 2007-08-03 15:40 33 chrM_gap.sql 2007-08-03 15:40 1.5K chrM_chainPriPac1Link.txt.gz 2007-08-03 15:40 1.6K chrM_chainPriPac1Link.sql 2007-08-03 15:40 1.4K chrM_chainPriPac1.txt.gz 2007-08-03 15:40 483 chrM_chainPriPac1.sql 2007-08-03 15:40 1.7K chrM_chainCaeRem2Link.txt.gz 2007-08-03 15:40 13K chrM_chainCaeRem2Link.sql 2007-08-03 15:40 1.4K chrM_chainCaeRem2.txt.gz 2007-08-03 15:40 2.5K chrM_chainCaeRem2.sql 2007-08-03 15:40 1.7K chrM_chainCaePb1Link.txt.gz 2007-08-03 15:40 608 chrM_chainCaePb1Link.sql 2007-08-03 15:40 1.4K chrM_chainCaePb1.txt.gz 2007-08-03 15:40 346 chrM_chainCaePb1.sql 2007-08-03 15:40 1.7K chrI_random_rmsk.txt.gz 2007-08-03 15:40 113K chrI_random_rmsk.sql 2007-08-03 15:40 1.9K chrI_random_gold.txt.gz 2007-08-03 15:40 271 chrI_random_gold.sql 2007-08-03 15:40 1.6K chrI_random_gap.txt.gz 2007-08-03 15:40 186 chrI_random_gap.sql 2007-08-03 15:40 1.5K chrI_random_chainPriPac1Link.txt.gz 2007-08-03 15:40 112K chrI_random_chainPriPac1Link.sql 2007-08-03 15:40 1.4K chrI_random_chainPriPac1.txt.gz 2007-08-03 15:40 48K chrI_random_chainPriPac1.sql 2007-08-03 15:40 1.7K chrI_rmsk.txt.gz 2007-08-03 15:40 319K chrI_rmsk.sql 2007-08-03 15:40 1.8K chrI_random_chainCaeRem2Link.txt.gz 2007-08-03 15:40 4.6M chrI_random_chainCaeRem2Link.sql 2007-08-03 15:40 1.4K chrI_random_chainCaeRem2.txt.gz 2007-08-03 15:40 1.4M chrI_random_chainCaeRem2.sql 2007-08-03 15:40 1.7K chrI_random_chainCaePb1Link.txt.gz 2007-08-03 15:40 849K chrI_random_chainCaePb1Link.sql 2007-08-03 15:40 1.4K chrI_random_chainCaePb1.txt.gz 2007-08-03 15:40 231K chrI_random_chainCaePb1.sql 2007-08-03 15:40 1.7K chrI_gold.txt.gz 2007-08-03 15:40 540 chrI_gold.sql 2007-08-03 15:40 1.6K chrI_gap.txt.gz 2007-08-03 15:40 342 chrI_gap.sql 2007-08-03 15:40 1.5K chrI_chainPriPac1Link.txt.gz 2007-08-03 15:40 408K chrI_chainPriPac1Link.sql 2007-08-03 15:40 1.4K chrI_chainPriPac1.txt.gz 2007-08-03 15:40 159K chrI_chainPriPac1.sql 2007-08-03 15:40 1.7K chrI_chainCaeRem2Link.txt.gz 2007-08-03 15:40 11M chrI_chainCaeRem2Link.sql 2007-08-03 15:40 1.4K chrI_chainCaeRem2.txt.gz 2007-08-03 15:40 3.7M chrI_chainCaeRem2.sql 2007-08-03 15:40 1.7K chrI_chainCaePb1Link.txt.gz 2007-08-03 15:40 2.6M chrI_chainCaePb1Link.sql 2007-08-03 15:40 1.4K chrI_chainCaePb1.txt.gz 2007-08-03 15:40 367K chrI_chainCaePb1.sql 2007-08-03 15:40 1.7K chrIV_rmsk.txt.gz 2007-08-03 15:39 413K chrIV_rmsk.sql 2007-08-03 15:39 1.8K chrIV_random_rmsk.txt.gz 2007-08-03 15:39 23K chrIV_random_rmsk.sql 2007-08-03 15:39 1.9K chrIV_random_gold.txt.gz 2007-08-03 15:39 162 chrIV_random_gold.sql 2007-08-03 15:39 1.6K 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