This directory contains reciprocal-best netted chains for canFam6-mm39.
- canFam6.mm39.rbest.net.gz: canFam6-referenced recip.best net to mm39.
- canFam6.mm39.rbest.chain.gz: chains extracted from the recip.best
net. These can be passed to the liftOver program to translate coords
from canFam6 to mm39 through the recip.best net.
- mm39.canFam6.rbest.net.gz: mm39-referenced recip.best net.
- mm39.canFam6.rbest.chain.gz: recip.best "liftOver" chains.
- axtRBestNet/canFam6.mm39.rbest.axt.gz reciprocal best alignments in
AXT format
See also, description of AXT format::
http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
http://genome.ucsc.edu/goldenPath/help/net.html
Name Last modified Size Description
Parent Directory -
mm39.canFam6.rbest.net.gz 2021-05-19 09:58 83M
mm39.canFam6.rbest.chain.gz 2021-05-19 09:59 55M
md5sum.txt 2021-05-19 10:02 244
canFam6.mm39.rbest.net.gz 2021-05-19 10:02 114M
canFam6.mm39.rbest.chain.gz 2021-05-19 10:00 55M
axtRBestNet/ 2021-11-22 16:45 -