This directory contains reciprocal-best netted chains for canFam5-mm39.
- canFam5.mm39.rbest.net.gz: canFam5-referenced recip.best net to mm39.
- canFam5.mm39.rbest.chain.gz: chains extracted from the recip.best
net. These can be passed to the liftOver program to translate coords
from canFam5 to mm39 through the recip.best net.
- mm39.canFam5.rbest.net.gz: mm39-referenced recip.best net.
- mm39.canFam5.rbest.chain.gz: recip.best "liftOver" chains.
- axtRBestNet/canFam5.mm39.rbest.axt.gz reciprocal best alignments in
AXT format
See also, description of AXT format::
http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
http://genome.ucsc.edu/goldenPath/help/net.html
Name Last modified Size Description
Parent Directory -
axtRBestNet/ 2021-01-21 15:42 -
canFam5.mm39.rbest.chain.gz 2020-09-10 18:22 56M
canFam5.mm39.rbest.net.gz 2020-09-10 18:23 115M
md5sum.txt 2020-09-10 18:23 244
mm39.canFam5.rbest.chain.gz 2020-09-10 18:21 56M
mm39.canFam5.rbest.net.gz 2020-09-10 18:20 84M