This directory contains compressed phastCons scores for multiple
alignments of the following assemblies to the dog genome (May 2005, canFam2):
- human (May 2004, hg17)
- mouse (mm6, Mar. 2005)
- rat (rn3, Jun. 2003)
For a description of the phastCons file format, see
http://genome.ucsc.edu/goldenPath/help/phastCons.html.
-----------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/canFam2/phastCons. To download multiple files,
use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All files in this directory are freely available for public use.
For data use restrictions regarding the other genome assemblies used
in this annotation, see http://genome.ucsc.edu/goldenPath/credits.html.
-------------------------------------------------------------
References for phastCons:
Siepel, A., Bejerano, G., Pedersen, J.S., Hinrichs, A., Hou, M.,
Rosenbloom, K., Clawson, H., Spieth, J., Hillier, L.W., Richards, S.,
Weinstock, G.M., Wilson, R. K., Gibbs, R.A., Kent, W.J., Miller, W.,
and Haussler, D. Evolutionarily conserved elements in vertebrate, insect,
worm, and yeast genomes. Genome Res. 15, 1034-1050 (2005).
(http://www.genome.org/cgi/doi/10.1101/gr.3715005)
Siepel, A. and Haussler, D. Phylogenetic hidden Markov models.
In Statistical Methods in Molecular Evolution (ed. Nielsen, R.) (Springer,
2005).
For a discussion of the methods used to calculate the phastCons scores,
see the description page for the Conservation track in the Genome
Browser.
Name Last modified Size Description
Parent Directory -
chr1.pp.gz 2005-12-13 18:01 118M
chrX.pp.gz 2005-12-13 18:11 100M
chr5.pp.gz 2005-12-13 18:06 92M
chr4.pp.gz 2005-12-13 18:05 92M
chr3.pp.gz 2005-12-13 18:04 91M
chr2.pp.gz 2005-12-13 18:02 85M
chr7.pp.gz 2005-12-13 18:08 83M
chr11.pp.gz 2005-12-13 18:13 76M
chr6.pp.gz 2005-12-13 18:07 76M
chr8.pp.gz 2005-12-13 18:09 75M
chr12.pp.gz 2005-12-13 18:14 73M
chr10.pp.gz 2005-12-13 18:12 70M
chr17.pp.gz 2005-12-13 18:18 66M
chr15.pp.gz 2005-12-13 18:17 65M
chr9.pp.gz 2005-12-13 18:10 64M
chr13.pp.gz 2005-12-13 18:15 64M
chr14.pp.gz 2005-12-13 18:16 63M
chr22.pp.gz 2005-12-13 18:22 61M
chr20.pp.gz 2005-12-13 18:20 59M
chr16.pp.gz 2005-12-13 18:17 56M
chr23.pp.gz 2005-12-13 18:22 54M
chr18.pp.gz 2005-12-13 18:19 54M
chr19.pp.gz 2005-12-13 18:19 53M
chr25.pp.gz 2005-12-13 18:24 51M
chr24.pp.gz 2005-12-13 18:23 50M
chr21.pp.gz 2005-12-13 18:21 50M
chr27.pp.gz 2005-12-13 18:25 45M
chr28.pp.gz 2005-12-13 18:25 43M
chr34.pp.gz 2005-12-13 18:29 42M
chr30.pp.gz 2005-12-13 18:26 42M
chr29.pp.gz 2005-12-13 18:26 42M
chr32.pp.gz 2005-12-13 18:28 38M
chr31.pp.gz 2005-12-13 18:27 38M
chr26.pp.gz 2005-12-13 18:24 37M
chr37.pp.gz 2005-12-13 18:30 33M
chr36.pp.gz 2005-12-13 18:29 33M
chr33.pp.gz 2005-12-13 18:28 32M
chr35.pp.gz 2005-12-13 18:29 26M
chr38.pp.gz 2005-12-13 18:30 25M
chrUn.pp.gz 2005-12-13 18:30 15M
chrM.pp.gz 2005-12-13 18:10 21K
md5sum.txt 2005-12-13 18:30 1.8K