This directory contains zipped multiple alignments of the
human (hg17, May 2004) and mouse (mm5, May 2004) assemblies
to the dog (canFam1, Jul. 2004) assembly. The chr*.maf.gz
files each contain all the alignments to that particular
dog chromosome.
The hg17 and mm5 directories contained gzipped alignment files
for the pairwise (blastz) alignments used in the multiple alignment.
For a description of multiple alignment format (MAF), see
http://genome.ucsc.edu/goldenPath/help/maf.html.
If you plan to download a large file or multiple files from
this directory, we recommend that you use ftp rather than
downloading the files via our website. To do so, ftp to
hgdownload.cse.ucsc.edu, then go to the directory
goldenPath/canFam1/multizHg17Mm5/. To download multiple files,
use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the tables in this directory are freely usable for any
purpose.
The dog genome sequence is made freely available by the Dog Genome Sequencing
Project. Please cite the following publication when using these data:
Lindblad-Toh K, et al. Genome sequence, comparative analysis and haplotype
structure of the domestic dog. Nature. 2005 Dec 8;438:803-19.
Name Last modified Size Description
Parent Directory -
md5sum.txt 2004-07-21 17:18 6.0K
mm5/ 2004-07-21 17:03 -
hg17/ 2004-07-21 16:15 -
chrX.maf.gz 2004-07-21 12:38 61M
chrUn.maf.gz 2004-07-21 12:34 13M
chrM.maf.gz 2004-07-21 12:33 15K
chr9.maf.gz 2004-07-21 12:33 35M
chr8.maf.gz 2004-07-21 12:31 48M
chr7.maf.gz 2004-07-21 12:29 53M
chr6.maf.gz 2004-07-21 12:26 48M
chr5.maf.gz 2004-07-21 12:24 60M
chr4.maf.gz 2004-07-21 12:21 58M
chr38.maf.gz 2004-07-21 12:17 15M
chr37.maf.gz 2004-07-21 12:16 21M
chr36.maf.gz 2004-07-21 12:15 21M
chr35.maf.gz 2004-07-21 12:14 17M
chr34.maf.gz 2004-07-21 12:13 27M
chr33.maf.gz 2004-07-21 12:11 21M
chr32.maf.gz 2004-07-21 12:10 24M
chr31.maf.gz 2004-07-21 12:09 23M
chr30.maf.gz 2004-07-21 12:05 26M
chr3.maf.gz 2004-07-21 12:02 58M
chr29.maf.gz 2004-07-21 11:53 26M
chr28.maf.gz 2004-07-21 11:49 27M
chr27.maf.gz 2004-07-21 11:45 28M
chr26.maf.gz 2004-07-21 11:41 23M
chr25.maf.gz 2004-07-21 11:38 32M
chr24.maf.gz 2004-07-21 11:35 32M
chr23.maf.gz 2004-07-21 11:33 33M
chr22.maf.gz 2004-07-21 11:31 38M
chr21.maf.gz 2004-07-21 11:28 31M
chr20.maf.gz 2004-07-21 11:26 38M
chr2.maf.gz 2004-07-21 11:24 55M
chr19.maf.gz 2004-07-21 11:20 32M
chr18.maf.gz 2004-07-21 11:17 40M
chr17.maf.gz 2004-07-21 11:14 42M
chr16.maf.gz 2004-07-21 11:11 35M
chr15.maf.gz 2004-07-21 11:09 42M
chr14.maf.gz 2004-07-21 11:05 40M
chr13.maf.gz 2004-07-21 11:02 40M
chr12.maf.gz 2004-07-21 10:59 45M
chr11.maf.gz 2004-07-21 10:56 48M
chr10.maf.gz 2004-07-21 10:52 45M
chr1.maf.gz 2004-07-21 10:49 75M