This directory contains a dump of the UCSC genome annotation database for the July 2004 GenBank assembly of the dog genome (UCSC version canFam1) from the Broad Institute at MIT and Harvard. Files included in this directory (updated nightly): - *.sql files: the MySQL commands used to create the tables. To see descriptions of the tables underlying Genome Browser annotation tracks, select the table in the Table Browser: http://genome.ucsc.edu/cgi-bin/hgTables?db=canFam1 and click the "describe table schema" button. There is also a "view table schema" link on the configuration page for each track. - *.txt.gz files: the database tables in a tab-delimited format compressed with gzip. -------------------------------------------------------------- If you plan to download a large file or multiple files from this directory, we recommend you use ftp rather than downloading the files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory goldenPath/canFam1/database. To download multiple files, use the "mget" command: mget <filename1> <filename2> ... - or - mget -a (to download all the files in the directory) All the tables in this directory are freely usable for any purpose. The dog genome sequence is made freely available by the Dog Genome Sequencing Project. Please cite the following publication when using these data: Lindblad-Toh K, et al. Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature. 2005 Dec 8;438:803-19.
Name Last modified Size Description
Parent Directory - xenoRefSeqAli.txt.gz 2020-08-21 04:14 38M xenoRefSeqAli.sql 2020-08-21 04:14 2.1K xenoRefGene.txt.gz 2020-08-21 04:13 38M xenoRefGene.sql 2020-08-21 04:13 2.0K xenoRefFlat.txt.gz 2020-08-21 04:13 34M xenoRefFlat.sql 2020-08-21 04:13 1.7K xenoMrna.txt.gz 2016-02-21 11:18 335M xenoMrna.sql 2016-02-21 11:18 2.3K twinscanPep.txt.gz 2004-11-18 11:58 6.0M twinscanPep.sql 2013-10-01 12:48 332 twinscan.txt.gz 2004-11-18 11:58 1.9M twinscan.sql 2013-10-01 12:48 1.0K trackDb.txt.gz 2023-03-28 13:47 31K trackDb.sql 2023-03-28 13:47 2.1K tableList.txt.gz 2024-11-24 03:22 20K tableList.sql 2024-11-24 03:22 1.6K tableDescriptions.txt.gz 2024-11-23 02:03 7.1K tableDescriptions.sql 2024-11-23 02:03 1.4K snpSeq.txt.gz 2006-12-03 11:01 20M snpSeq.sql 2006-12-03 11:01 1.1K snp125Exceptions.txt.gz 2006-08-26 08:47 1.0M snp125Exceptions.sql 2006-08-26 08:47 1.3K snp125ExceptionDesc.txt.gz 2006-08-26 08:47 392 snp125ExceptionDesc.sql 2006-08-26 08:47 1.2K snp125.txt.gz 2006-08-26 08:46 36M snp125.sql 2006-08-26 08:45 2.2K simpleRepeat.txt.gz 2004-07-13 18:05 14M simpleRepeat.sql 2013-10-01 12:48 1.1K seq.txt.gz 2005-12-04 05:12 4.7M seq.sql 2013-10-01 12:48 591 refSeqAli.txt.gz 2020-08-21 04:14 184K refSeqAli.sql 2020-08-21 04:14 2.1K refGene.txt.gz 2020-08-21 04:07 178K refGene.sql 2020-08-21 04:07 1.9K refFlat.txt.gz 2020-08-21 04:13 165K refFlat.sql 2020-08-21 04:13 1.7K quality.txt.gz 2004-07-13 18:04 38M quality.sql 2013-10-01 12:48 891 nscanGene.txt.gz 2006-04-23 03:43 2.0M nscanGene.sql 2013-10-01 12:48 1.1K netMm6.txt.gz 2005-05-05 05:24 63M netMm6.sql 2013-10-01 12:48 1.3K netHg17.txt.gz 2004-08-02 16:43 64M netHg17.sql 2013-10-01 12:48 1.3K mzHg17Mm5_phast2_wig.txt.gz 2004-10-07 07:37 56M mzHg17Mm5_phast2_wig.sql 2013-10-01 12:48 917 mzHg17Mm5_phast.txt.gz 2004-08-02 16:00 69M mzHg17Mm5_phast.sql 2013-10-01 12:48 668 mrnaOrientInfo.txt.gz 2020-08-21 04:14 88K mrnaOrientInfo.sql 2020-08-21 04:14 1.8K mouse_chm.txt.gz 2004-08-02 15:45 23M mouse_chm.sql 2013-10-01 12:48 656 microsat.txt.gz 2008-02-24 03:12 645K microsat.sql 2008-02-24 03:12 1.3K human_chm.txt.gz 2004-08-02 15:38 31M human_chm.sql 2013-10-01 12:48 656 history.txt.gz 2010-07-04 14:46 245 history.sql 2010-07-04 14:46 1.6K hgFindSpec.txt.gz 2023-03-28 13:47 1.0K hgFindSpec.sql 2023-03-28 13:47 1.8K grp.txt.gz 2014-03-02 03:40 223 grp.sql 2014-03-02 03:40 1.4K genscanPep.txt.gz 2004-07-13 18:00 11M genscanPep.sql 2013-10-01 12:48 330 genscan.txt.gz 2005-01-09 04:32 3.1M genscan.sql 2013-10-01 12:48 748 genomicSuperDups.txt.gz 2007-12-14 20:03 5.2M genomicSuperDups.sql 2007-12-14 20:03 2.6K gc5Base.txt.gz 2004-07-13 17:57 9.4M gc5Base.sql 2013-10-01 12:48 891 gbLoaded.txt.gz 2020-08-21 04:19 40K gbLoaded.sql 2020-08-21 04:19 1.6K gbDelete_tmp.txt.gz 2005-09-27 05:01 180K gbDelete_tmp.sql 2013-10-01 12:48 326 extFile.txt.gz 2006-12-03 11:00 1.7K extFile.sql 2006-12-03 11:00 1.2K estOrientInfo.txt.gz 2016-07-10 05:55 4.5M estOrientInfo.sql 2016-07-10 05:55 1.8K ensPep.txt.gz 2006-03-08 08:21 1.1M ensPep.sql 2013-10-01 12:48 322 ensGtp.txt.gz 2006-03-08 08:21 284K ensGtp.sql 2013-10-01 12:48 443 ensGene.txt.gz 2006-03-08 08:21 2.4M ensGene.sql 2013-10-01 12:48 1.0K contigAcc.txt.gz 2004-10-14 04:16 300K contigAcc.sql 2013-10-01 12:48 343 chromInfo.txt.gz 2004-07-13 18:00 458 chromInfo.sql 2013-10-01 12:48 396 chrX_rmsk.txt.gz 2004-07-13 18:00 5.8M chrX_rmsk.sql 2013-10-01 12:48 1.0K chrX_mrna.txt.gz 2020-08-21 03:44 11K chrX_mrna.sql 2020-08-21 03:44 2.1K chrX_intronEst.txt.gz 2016-07-10 05:55 264K chrX_intronEst.sql 2016-07-10 05:55 2.1K chrX_gold.txt.gz 2004-07-13 18:00 45K chrX_gold.sql 2013-10-01 12:48 781 chrX_gap.txt.gz 2004-07-13 18:00 34K chrX_gap.sql 2013-10-01 12:48 704 chrX_est.txt.gz 2016-07-10 05:55 577K chrX_est.sql 2016-07-10 05:55 2.1K chrX_chainMm6Link.txt.gz 2005-05-05 05:23 20M chrX_chainMm6Link.sql 2013-10-01 12:48 575 chrX_chainMm6.txt.gz 2005-05-05 05:22 2.1M chrX_chainMm6.sql 2013-10-01 12:48 852 chrX_chainHg17Link.txt.gz 2004-08-02 16:41 36M chrX_chainHg17Link.sql 2013-10-01 12:48 577 chrX_chainHg17.txt.gz 2004-08-02 16:40 5.7M chrX_chainHg17.sql 2013-10-01 12:48 854 chrUn_rmsk.txt.gz 2004-07-13 18:00 2.5M chrUn_rmsk.sql 2013-10-01 12:48 1.0K chrUn_mrna.txt.gz 2019-10-20 07:01 7.3K chrUn_mrna.sql 2019-10-20 07:01 2.1K chrUn_intronEst.txt.gz 2016-07-10 05:55 270K chrUn_intronEst.sql 2016-07-10 05:55 2.1K chrUn_gold.txt.gz 2004-07-13 17:59 317K chrUn_gold.sql 2013-10-01 12:48 783 chrUn_gap.txt.gz 2004-07-13 17:59 241K chrUn_gap.sql 2013-10-01 12:48 706 chrUn_est.txt.gz 2016-07-10 05:55 651K chrUn_est.sql 2016-07-10 05:55 2.1K chrUn_chainMm6Link.txt.gz 2005-05-05 05:22 19M chrUn_chainMm6Link.sql 2013-10-01 12:48 577 chrUn_chainMm6.txt.gz 2005-05-05 05:22 3.6M chrUn_chainMm6.sql 2013-10-01 12:48 854 chrUn_chainHg17Link.txt.gz 2004-08-02 16:39 36M chrUn_chainHg17Link.sql 2013-10-01 12:48 579 chrUn_chainHg17.txt.gz 2004-08-02 16:39 9.6M chrUn_chainHg17.sql 2013-10-01 12:48 856 chrM_rmsk.txt.gz 2004-07-13 17:59 263 chrM_rmsk.sql 2013-10-01 12:48 1.0K chrM_mrna.txt.gz 2016-07-10 05:55 95 chrM_mrna.sql 2016-07-10 05:55 2.1K chrM_intronEst.txt.gz 2016-07-10 05:55 110 chrM_intronEst.sql 2016-07-10 05:55 2.1K chrM_gap.txt.gz 2004-07-13 17:59 33 chrM_gap.sql 2013-10-01 12:48 615 chrM_est.txt.gz 2016-07-10 05:55 370K chrM_est.sql 2016-07-10 05:55 2.1K chrM_chainMm6Link.txt.gz 2005-05-05 05:22 19K chrM_chainMm6Link.sql 2013-10-01 12:48 575 chrM_chainMm6.txt.gz 2005-05-05 05:22 3.6K chrM_chainMm6.sql 2013-10-01 12:48 852 chrM_chainHg17Link.txt.gz 2004-08-02 16:39 68K chrM_chainHg17Link.sql 2013-10-01 12:48 577 chrM_chainHg17.txt.gz 2004-08-02 16:39 12K chrM_chainHg17.sql 2013-10-01 12:48 854 chr38_rmsk.txt.gz 2004-07-13 17:59 1.0M chr38_rmsk.sql 2013-10-01 12:48 1.0K chr38_mrna.txt.gz 2018-11-11 05:29 3.2K chr38_mrna.sql 2018-11-11 05:29 2.1K chr38_intronEst.txt.gz 2016-07-10 05:55 60K chr38_intronEst.sql 2016-07-10 05:55 2.1K chr38_gold.txt.gz 2004-07-13 17:59 8.0K chr38_gold.sql 2013-10-01 12:48 783 chr38_gap.txt.gz 2004-07-13 17:59 6.2K chr38_gap.sql 2013-10-01 12:48 706 chr38_est.txt.gz 2016-07-10 05:55 135K chr38_est.sql 2016-07-10 05:55 2.1K chr38_chainMm6Link.txt.gz 2005-05-05 05:19 7.3M chr38_chainMm6Link.sql 2013-10-01 12:48 577 chr38_chainMm6.txt.gz 2005-05-05 05:19 714K chr38_chainMm6.sql 2013-10-01 12:48 854 chr38_chainHg17Link.txt.gz 2004-08-02 16:33 7.6M chr38_chainHg17Link.sql 2013-10-01 12:48 579 chr38_chainHg17.txt.gz 2004-08-02 16:33 691K chr38_chainHg17.sql 2013-10-01 12:48 856 chr37_rmsk.txt.gz 2004-07-13 17:59 1.3M chr37_rmsk.sql 2013-10-01 12:48 1.0K chr37_mrna.txt.gz 2018-01-21 05:56 3.6K chr37_mrna.sql 2018-01-21 05:56 2.1K chr37_intronEst.txt.gz 2016-07-10 05:55 106K chr37_intronEst.sql 2016-07-10 05:55 2.1K chr37_gold.txt.gz 2004-07-13 17:59 9.0K chr37_gold.sql 2013-10-01 12:48 783 chr37_gap.txt.gz 2004-07-13 17:59 6.9K chr37_gap.sql 2013-10-01 12:48 706 chr37_est.txt.gz 2016-07-10 05:55 208K chr37_est.sql 2016-07-10 05:55 2.1K chr37_chainMm6Link.txt.gz 2005-05-05 05:19 5.7M chr37_chainMm6Link.sql 2013-10-01 12:48 577 chr37_chainMm6.txt.gz 2005-05-05 05:19 294K chr37_chainMm6.sql 2013-10-01 12:48 854 chr37_chainHg17Link.txt.gz 2004-08-02 16:32 6.7M chr37_chainHg17Link.sql 2013-10-01 12:48 579 chr37_chainHg17.txt.gz 2004-08-02 16:32 400K chr37_chainHg17.sql 2013-10-01 12:48 856 chr36_rmsk.txt.gz 2004-07-13 17:59 1.3M chr36_rmsk.sql 2013-10-01 12:48 1.0K chr36_mrna.txt.gz 2016-07-10 05:55 3.3K chr36_mrna.sql 2016-07-10 05:55 2.1K chr36_intronEst.txt.gz 2016-07-10 05:55 64K chr36_intronEst.sql 2016-07-10 05:55 2.1K chr36_gold.txt.gz 2004-07-13 17:59 8.7K chr36_gold.sql 2013-10-01 12:48 783 chr36_gap.txt.gz 2004-07-13 17:59 6.7K chr36_gap.sql 2013-10-01 12:48 706 chr36_est.txt.gz 2016-07-10 05:55 133K chr36_est.sql 2016-07-10 05:55 2.1K chr36_chainMm6Link.txt.gz 2005-05-05 05:19 5.7M chr36_chainMm6Link.sql 2013-10-01 12:48 577 chr36_chainMm6.txt.gz 2005-05-05 05:19 329K chr36_chainMm6.sql 2013-10-01 12:48 854 chr36_chainHg17Link.txt.gz 2004-08-02 16:32 6.8M chr36_chainHg17Link.sql 2013-10-01 12:48 579 chr36_chainHg17.txt.gz 2004-08-02 16:32 427K chr36_chainHg17.sql 2013-10-01 12:48 856 chr35_rmsk.txt.gz 2004-07-13 17:59 1.2M chr35_rmsk.sql 2013-10-01 12:48 1.0K chr35_mrna.txt.gz 2019-05-26 04:56 1.8K chr35_mrna.sql 2019-05-26 04:56 2.1K chr35_intronEst.txt.gz 2016-07-10 05:55 48K chr35_intronEst.sql 2016-07-10 05:55 2.1K chr35_gold.txt.gz 2004-07-13 17:59 7.4K chr35_gold.sql 2013-10-01 12:48 783 chr35_gap.txt.gz 2004-07-13 17:59 5.7K chr35_gap.sql 2013-10-01 12:48 706 chr35_est.txt.gz 2016-07-10 05:55 161K chr35_est.sql 2016-07-10 05:55 2.1K chr35_chainMm6Link.txt.gz 2005-05-05 05:18 7.9M chr35_chainMm6Link.sql 2013-10-01 12:48 577 chr35_chainMm6.txt.gz 2005-05-05 05:18 1.2M chr35_chainMm6.sql 2013-10-01 12:48 854 chr35_chainHg17Link.txt.gz 2004-08-02 16:32 17M chr35_chainHg17Link.sql 2013-10-01 12:48 579 chr35_chainHg17.txt.gz 2004-08-02 16:32 4.8M chr35_chainHg17.sql 2013-10-01 12:48 856 chr34_rmsk.txt.gz 2004-07-13 17:59 1.8M chr34_rmsk.sql 2013-10-01 12:48 1.0K chr34_mrna.txt.gz 2017-01-01 10:12 2.7K chr34_mrna.sql 2017-01-01 10:12 2.1K chr34_intronEst.txt.gz 2016-07-10 05:55 91K chr34_intronEst.sql 2016-07-10 05:55 2.1K chr34_gold.txt.gz 2004-07-13 17:58 11K chr34_gold.sql 2013-10-01 12:48 783 chr34_gap.txt.gz 2004-07-13 17:58 8.7K chr34_gap.sql 2013-10-01 12:48 706 chr34_est.txt.gz 2016-07-10 05:55 192K chr34_est.sql 2016-07-10 05:55 2.1K chr34_chainMm6Link.txt.gz 2005-05-05 05:18 6.2M chr34_chainMm6Link.sql 2013-10-01 12:48 577 chr34_chainMm6.txt.gz 2005-05-05 05:18 377K chr34_chainMm6.sql 2013-10-01 12:48 854 chr34_chainHg17Link.txt.gz 2004-08-02 16:31 9.0M chr34_chainHg17Link.sql 2013-10-01 12:48 579 chr34_chainHg17.txt.gz 2004-08-02 16:31 502K chr34_chainHg17.sql 2013-10-01 12:48 856 chr33_rmsk.txt.gz 2004-07-13 17:58 1.4M chr33_rmsk.sql 2013-10-01 12:48 1.0K chr33_mrna.txt.gz 2018-06-24 06:02 3.0K chr33_mrna.sql 2018-06-24 06:02 2.1K chr33_intronEst.txt.gz 2016-07-10 05:55 72K chr33_intronEst.sql 2016-07-10 05:55 2.1K chr33_gold.txt.gz 2004-07-13 17:58 9.9K chr33_gold.sql 2013-10-01 12:48 783 chr33_gap.txt.gz 2004-07-13 17:58 7.7K chr33_gap.sql 2013-10-01 12:48 706 chr33_est.txt.gz 2016-07-10 05:55 148K chr33_est.sql 2016-07-10 05:55 2.1K chr33_chainMm6Link.txt.gz 2005-05-05 05:18 8.5M chr33_chainMm6Link.sql 2013-10-01 12:48 577 chr33_chainMm6.txt.gz 2005-05-05 05:18 577K chr33_chainMm6.sql 2013-10-01 12:48 854 chr33_chainHg17Link.txt.gz 2004-08-02 16:31 8.3M chr33_chainHg17Link.sql 2013-10-01 12:48 579 chr33_chainHg17.txt.gz 2004-08-02 16:31 705K chr33_chainHg17.sql 2013-10-01 12:48 856 chr32_rmsk.txt.gz 2004-07-13 17:58 1.8M chr32_rmsk.sql 2013-10-01 12:48 1.0K chr32_mrna.txt.gz 2016-07-10 05:55 2.8K chr32_mrna.sql 2016-07-10 05:55 2.1K chr32_intronEst.txt.gz 2016-07-10 05:55 88K chr32_intronEst.sql 2016-07-10 05:55 2.1K chr32_gold.txt.gz 2004-07-13 17:58 9.0K chr32_gold.sql 2013-10-01 12:48 783 chr32_gap.txt.gz 2004-07-13 17:58 6.7K chr32_gap.sql 2013-10-01 12:48 706 chr32_est.txt.gz 2016-07-10 05:55 184K chr32_est.sql 2016-07-10 05:55 2.1K chr32_chainMm6Link.txt.gz 2005-05-05 05:18 6.4M chr32_chainMm6Link.sql 2013-10-01 12:48 577 chr32_chainMm6.txt.gz 2005-05-05 05:18 418K chr32_chainMm6.sql 2013-10-01 12:48 854 chr32_chainHg17Link.txt.gz 2004-08-02 16:31 8.5M chr32_chainHg17Link.sql 2013-10-01 12:48 579 chr32_chainHg17.txt.gz 2004-08-02 16:31 619K chr32_chainHg17.sql 2013-10-01 12:48 856 chr31_rmsk.txt.gz 2004-07-13 17:58 1.6M chr31_rmsk.sql 2013-10-01 12:48 1.0K chr31_mrna.txt.gz 2020-08-21 03:39 3.3K chr31_mrna.sql 2020-08-21 03:39 2.1K chr31_intronEst.txt.gz 2016-07-10 05:55 73K chr31_intronEst.sql 2016-07-10 05:55 2.1K chr31_gold.txt.gz 2004-07-13 17:58 11K chr31_gold.sql 2013-10-01 12:48 783 chr31_gap.txt.gz 2004-07-13 17:58 8.2K chr31_gap.sql 2013-10-01 12:48 706 chr31_est.txt.gz 2016-07-10 05:55 181K chr31_est.sql 2016-07-10 05:55 2.1K chr31_chainMm6Link.txt.gz 2005-05-05 05:18 6.0M chr31_chainMm6Link.sql 2013-10-01 12:48 577 chr31_chainMm6.txt.gz 2005-05-05 05:18 434K chr31_chainMm6.sql 2013-10-01 12:48 854 chr31_chainHg17Link.txt.gz 2004-08-02 16:31 8.3M chr31_chainHg17Link.sql 2013-10-01 12:48 579 chr31_chainHg17.txt.gz 2004-08-02 16:30 532K chr31_chainHg17.sql 2013-10-01 12:48 856 chr30_rmsk.txt.gz 2004-07-13 17:58 1.9M chr30_rmsk.sql 2013-10-01 12:48 1.0K chr30_mrna.txt.gz 2016-07-10 05:55 4.2K chr30_mrna.sql 2016-07-10 05:55 2.1K chr30_intronEst.txt.gz 2016-07-10 05:56 177K chr30_intronEst.sql 2016-07-10 05:56 2.1K chr30_gold.txt.gz 2004-07-13 17:58 12K chr30_gold.sql 2013-10-01 12:48 783 chr30_gap.txt.gz 2004-07-13 17:58 9.6K chr30_gap.sql 2013-10-01 12:48 706 chr30_est.txt.gz 2016-07-10 05:55 321K chr30_est.sql 2016-07-10 05:55 2.1K chr30_chainMm6Link.txt.gz 2005-05-05 05:18 9.7M chr30_chainMm6Link.sql 2013-10-01 12:48 577 chr30_chainMm6.txt.gz 2005-05-05 05:17 803K chr30_chainMm6.sql 2013-10-01 12:48 854 chr30_chainHg17Link.txt.gz 2004-08-02 16:30 11M chr30_chainHg17Link.sql 2013-10-01 12:48 579 chr30_chainHg17.txt.gz 2004-08-02 16:30 1.1M chr30_chainHg17.sql 2013-10-01 12:48 856 chr29_rmsk.txt.gz 2004-07-13 17:58 1.8M chr29_rmsk.sql 2013-10-01 12:48 1.0K chr29_mrna.txt.gz 2019-03-17 08:13 3.2K chr29_mrna.sql 2019-03-17 08:13 2.1K chr29_intronEst.txt.gz 2016-07-10 05:55 70K chr29_intronEst.sql 2016-07-10 05:55 2.1K chr29_gold.txt.gz 2004-07-13 17:58 10K chr29_gold.sql 2013-10-01 12:48 783 chr29_gap.txt.gz 2004-07-13 17:58 7.9K chr29_gap.sql 2013-10-01 12:48 706 chr29_est.txt.gz 2016-07-10 05:55 147K chr29_est.sql 2016-07-10 05:55 2.1K chr29_chainMm6Link.txt.gz 2005-05-05 05:17 6.7M chr29_chainMm6Link.sql 2013-10-01 12:48 577 chr29_chainMm6.txt.gz 2005-05-05 05:17 483K chr29_chainMm6.sql 2013-10-01 12:48 854 chr29_chainHg17Link.txt.gz 2004-08-02 16:29 9.4M chr29_chainHg17Link.sql 2013-10-01 12:48 579 chr29_chainHg17.txt.gz 2004-08-02 16:29 722K chr29_chainHg17.sql 2013-10-01 12:48 856 chr28_rmsk.txt.gz 2004-07-13 17:58 1.8M chr28_rmsk.sql 2013-10-01 12:48 1.0K 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