This directory contains the Jul. 2004 assembly of the dog genome
(UCSC version canFam1) produced by the Broad Institute at MIT.
Files included in this directory:
chr*.fa.zip: compressed FASTA sequence of each chromosome.
Repeats (from RepeatMasker and Tandem Repeat Finder)
are in lower case while non-repeating sequence is in upper case.
RepeatMasker March 2004 version with RepBase libraries:
RepBase Update 8.12, RM database version 20040306.
-------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/canFam1/chromosomes. To download multiple files,
use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
The dog genome sequence is made freely available by the Dog Genome Sequencing
Project. Please cite the following publication when using these data:
Lindblad-Toh K, et al. Genome sequence, comparative analysis and haplotype
structure of the domestic dog. Nature. 2005 Dec 8;438:803-19.
Name Last modified Size Description
Parent Directory -
chr1.fa.zip 2004-07-07 16:48 38M
chr10.fa.zip 2004-07-07 16:49 22M
chr11.fa.zip 2004-07-07 16:50 23M
chr12.fa.zip 2004-07-07 16:51 23M
chr13.fa.zip 2004-07-07 16:52 20M
chr14.fa.zip 2004-07-07 16:52 19M
chr15.fa.zip 2004-07-07 16:53 20M
chr16.fa.zip 2004-07-07 16:54 18M
chr17.fa.zip 2004-07-07 16:55 20M
chr18.fa.zip 2004-07-07 16:56 20M
chr19.fa.zip 2004-07-07 16:57 17M
chr2.fa.zip 2004-07-07 16:58 26M
chr20.fa.zip 2004-07-07 16:59 18M
chr21.fa.zip 2004-07-07 16:59 16M
chr22.fa.zip 2004-07-07 17:00 19M
chr23.fa.zip 2004-07-07 17:01 16M
chr24.fa.zip 2004-07-07 17:02 15M
chr25.fa.zip 2004-07-07 17:02 16M
chr26.fa.zip 2004-07-07 17:03 12M
chr27.fa.zip 2004-07-07 17:04 14M
chr28.fa.zip 2004-07-07 17:04 12M
chr29.fa.zip 2004-07-07 17:05 13M
chr3.fa.zip 2004-07-07 17:06 29M
chr30.fa.zip 2004-07-07 17:07 13M
chr31.fa.zip 2004-07-07 17:07 12M
chr32.fa.zip 2004-07-07 17:08 12M
chr33.fa.zip 2004-07-07 17:08 9.8M
chr34.fa.zip 2004-07-07 17:09 13M
chr35.fa.zip 2004-07-07 17:09 8.3M
chr36.fa.zip 2004-07-07 17:10 9.7M
chr37.fa.zip 2004-07-07 17:10 9.6M
chr38.fa.zip 2004-07-07 17:11 7.3M
chr4.fa.zip 2004-07-07 17:12 28M
chr5.fa.zip 2004-07-07 17:13 28M
chr6.fa.zip 2004-07-07 17:14 24M
chr7.fa.zip 2004-07-07 17:15 25M
chr8.fa.zip 2004-07-07 17:16 23M
chr9.fa.zip 2004-07-07 17:17 16M
chrM.fa.zip 2004-07-07 17:17 5.5K
chrUn.fa.zip 2004-07-07 17:18 21M
chrX.fa.zip 2004-07-07 17:19 38M
md5sum.txt 2004-07-07 17:24 1.9K