This directory contains reciprocal-best netted chains for calJac1-hg18.

 - calJac1.hg18.rbest.net.gz: calJac1-referenced recip.best net to hg18.
 - calJac1.hg18.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from calJac1 to hg18 through the recip.best net.

 - hg18.calJac1.rbest.net.gz: hg18-referenced recip.best net.
 - hg18.calJac1.rbest.chain.gz: recip.best "liftOver" chains.
 - axtRBestNet/calJac1.hg18.rbest.axt.gz: chained and netted alignments,
   i.e. the best chains in the Marmoset genome, with gaps in the best
   chains filled in by next-best chains where possible.  Only alignments
   that are reciprocal best are kept.  The axt format is
   described in http://genome.ucsc.edu/goldenPath/help/axt.html .
	      

      Name                        Last modified      Size  Description
      Parent Directory                                 -   
      axtRBestNet/                2008-04-22 10:32    -   
      md5sum.txt                  2007-12-14 15:41  244   
      calJac1.hg18.rbest.net.gz   2007-12-14 15:41   81M  
      calJac1.hg18.rbest.chain.gz 2007-12-14 15:39   56M  
      hg18.calJac1.rbest.chain.gz 2007-12-14 15:38   56M  
      hg18.calJac1.rbest.net.gz   2007-12-14 15:36  108M