This directory contains a dump of the UCSC genome annotation database for
the Mar. 2006 assembly of the C. remanei genome (caeRem2, WUSTL School of
Medicine GSC C. remanei 1.0). The annotations were generated by UCSC
and collaborators worldwide.
This assembly was produced by the Genome Sequencing Center at
the Washington University School of Medicine in St. Louis (WUSTL).
For more information on the C. remanei genome, see the project website:
http://genome.wustl.edu/genome.cgi?GENOME=Caenorhabditis+remanei.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=caeRem2
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/caeRem2/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
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The C. remanei sequence is made freely available to the community by the
Genome Sequencing Center at the WUSTL School of Medicine. Please see the
WUSTL data use policy at http://genome.wustl.edu/data.cgi for data use
restrictions and citation information.
Name Last modified Size Description
Parent Directory -
bigFiles.txt.gz 2024-11-17 03:22 33
chromInfo.txt.gz 2007-08-03 15:31 70
grp.txt.gz 2014-03-02 03:40 208
history.txt.gz 2007-08-03 15:33 507
hgFindSpec.txt.gz 2023-03-28 13:46 630
chromInfo.sql 2007-08-03 15:31 1.2K
windowmaskerSdust.sql 2007-08-03 15:34 1.3K
bigFiles.sql 2024-11-17 03:22 1.4K
grp.sql 2014-03-02 03:40 1.4K
history.sql 2007-08-03 15:33 1.4K
ctgPos2.sql 2007-08-03 15:31 1.4K
chrUn_chainCb3Link.sql 2007-08-03 15:26 1.4K
chrUn_chainCe4Link.sql 2007-08-03 15:30 1.4K
chrUn_chainCaePb1Link.sql 2007-08-03 15:12 1.4K
chrUn_chainPriPac1Link.sql 2007-08-03 15:31 1.4K
tableDescriptions.sql 2024-11-16 02:03 1.4K
microsat.sql 2015-08-23 11:01 1.5K
chrUn_gap.sql 2007-08-03 15:31 1.5K
tableList.sql 2024-11-17 03:22 1.6K
chrUn_gold.sql 2007-08-03 15:31 1.6K
gbLoaded.sql 2020-08-21 00:04 1.6K
chrUn_chainCb3.sql 2007-08-03 15:25 1.7K
chrUn_chainCe4.sql 2007-08-03 15:29 1.7K
chrUn_chainCaePb1.sql 2007-08-03 15:06 1.7K
chrUn_chainPriPac1.sql 2007-08-03 15:31 1.7K
tRNAs.sql 2012-04-22 19:16 1.7K
gc5Base.sql 2007-08-03 15:33 1.7K
xenoRefFlat.sql 2020-08-20 23:58 1.7K
hgFindSpec.sql 2023-03-28 13:46 1.8K
estOrientInfo.sql 2016-06-05 09:11 1.8K
mrnaOrientInfo.sql 2016-05-15 07:46 1.8K
chrUn_rmsk.sql 2007-08-03 15:31 1.9K
augustusGene.sql 2015-07-26 10:40 1.9K
xenoRefGene.sql 2020-08-20 23:58 2.0K
simpleRepeat.sql 2007-08-03 15:34 2.0K
trackDb.sql 2023-03-28 13:46 2.1K
all_est.sql 2016-06-05 09:11 2.1K
all_mrna.sql 2016-05-15 07:46 2.1K
intronEst.sql 2016-06-05 09:11 2.1K
blastCe4SG.sql 2007-08-03 15:06 2.1K
xenoRefSeqAli.sql 2020-08-21 00:04 2.1K
microsat.txt.gz 2015-08-23 11:01 2.2K
netCb3.sql 2007-08-03 15:33 2.2K
netCe4.sql 2007-08-03 15:34 2.2K
netCaePb1.sql 2007-08-03 15:33 2.2K
netPriPac1.sql 2007-08-03 15:34 2.2K
xenoMrna.sql 2016-02-21 10:50 2.3K
tableList.txt.gz 2024-11-17 03:22 2.7K
mrnaOrientInfo.txt.gz 2016-05-15 07:46 4.5K
tableDescriptions.txt.gz 2024-11-16 02:03 5.0K
all_mrna.txt.gz 2016-05-15 07:46 15K
trackDb.txt.gz 2023-03-28 13:46 16K
tRNAs.txt.gz 2012-04-22 19:16 23K
gbLoaded.txt.gz 2020-08-21 00:04 43K
chrUn_gold.txt.gz 2007-08-03 15:31 162K
estOrientInfo.txt.gz 2016-06-05 09:11 270K
chrUn_gap.txt.gz 2007-08-03 15:31 348K
ctgPos2.txt.gz 2007-08-03 15:31 373K
chrUn_rmsk.txt.gz 2007-08-03 15:31 616K
gc5Base.txt.gz 2007-08-03 15:33 706K
intronEst.txt.gz 2016-06-05 09:11 1.0M
netPriPac1.txt.gz 2007-08-03 15:34 1.1M
simpleRepeat.txt.gz 2007-08-03 15:34 1.2M
all_est.txt.gz 2016-06-05 09:11 1.3M
blastCe4SG.txt.gz 2007-08-03 15:06 1.8M
augustusGene.txt.gz 2015-07-26 10:40 2.1M
chrUn_chainPriPac1.txt.gz 2007-08-03 15:31 3.2M
netCe4.txt.gz 2007-08-03 15:34 4.1M
netCb3.txt.gz 2007-08-03 15:34 5.1M
chrUn_chainCe4.txt.gz 2007-08-03 15:29 6.7M
netCaePb1.txt.gz 2007-08-03 15:33 6.7M
windowmaskerSdust.txt.gz 2007-08-03 15:34 7.3M
chrUn_chainPriPac1Link.txt.gz 2007-08-03 15:31 8.8M
xenoRefFlat.txt.gz 2020-08-20 23:58 10M
xenoRefGene.txt.gz 2020-08-20 23:58 12M
xenoRefSeqAli.txt.gz 2020-08-21 00:04 12M
chrUn_chainCe4Link.txt.gz 2007-08-03 15:30 32M
chrUn_chainCb3.txt.gz 2007-08-03 15:26 42M
xenoMrna.txt.gz 2016-02-21 10:50 89M
chrUn_chainCb3Link.txt.gz 2007-08-03 15:28 131M
chrUn_chainCaePb1.txt.gz 2007-08-03 15:09 199M
chrUn_chainCaePb1Link.txt.gz 2007-08-03 15:18 471M