This directory contains a dump of the UCSC genome annotation database for
the Mar. 2006 assembly of the C. remanei genome (caeRem2, WUSTL School of
Medicine GSC C. remanei 1.0). The annotations were generated by UCSC
and collaborators worldwide.
This assembly was produced by the Genome Sequencing Center at
the Washington University School of Medicine in St. Louis (WUSTL).
For more information on the C. remanei genome, see the project website:
http://genome.wustl.edu/genome.cgi?GENOME=Caenorhabditis+remanei.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=caeRem2
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
---------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/caeRem2/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
------------------------------------------------------------------
The C. remanei sequence is made freely available to the community by the
Genome Sequencing Center at the WUSTL School of Medicine. Please see the
WUSTL data use policy at http://genome.wustl.edu/data.cgi for data use
restrictions and citation information.
Name Last modified Size Description
Parent Directory -
xenoRefSeqAli.txt.gz 2020-08-21 00:04 12M
xenoRefSeqAli.sql 2020-08-21 00:04 2.1K
xenoRefGene.txt.gz 2020-08-20 23:58 12M
xenoRefGene.sql 2020-08-20 23:58 2.0K
xenoRefFlat.txt.gz 2020-08-20 23:58 10M
xenoRefFlat.sql 2020-08-20 23:58 1.7K
xenoMrna.txt.gz 2016-02-21 10:50 89M
xenoMrna.sql 2016-02-21 10:50 2.3K
windowmaskerSdust.txt.gz 2007-08-03 15:34 7.3M
windowmaskerSdust.sql 2007-08-03 15:34 1.3K
trackDb.txt.gz 2023-03-28 13:46 16K
trackDb.sql 2023-03-28 13:46 2.1K
tableList.txt.gz 2024-11-24 03:12 2.7K
tableList.sql 2024-11-24 03:12 1.6K
tableDescriptions.txt.gz 2024-11-23 02:03 5.0K
tableDescriptions.sql 2024-11-23 02:03 1.4K
tRNAs.txt.gz 2012-04-22 19:16 23K
tRNAs.sql 2012-04-22 19:16 1.7K
simpleRepeat.txt.gz 2007-08-03 15:34 1.2M
simpleRepeat.sql 2007-08-03 15:34 2.0K
netPriPac1.txt.gz 2007-08-03 15:34 1.1M
netPriPac1.sql 2007-08-03 15:34 2.2K
netCe4.txt.gz 2007-08-03 15:34 4.1M
netCe4.sql 2007-08-03 15:34 2.2K
netCb3.txt.gz 2007-08-03 15:34 5.1M
netCb3.sql 2007-08-03 15:33 2.2K
netCaePb1.txt.gz 2007-08-03 15:33 6.7M
netCaePb1.sql 2007-08-03 15:33 2.2K
mrnaOrientInfo.txt.gz 2016-05-15 07:46 4.5K
mrnaOrientInfo.sql 2016-05-15 07:46 1.8K
microsat.txt.gz 2015-08-23 11:01 2.2K
microsat.sql 2015-08-23 11:01 1.5K
intronEst.txt.gz 2016-06-05 09:11 1.0M
intronEst.sql 2016-06-05 09:11 2.1K
history.txt.gz 2007-08-03 15:33 507
history.sql 2007-08-03 15:33 1.4K
hgFindSpec.txt.gz 2023-03-28 13:46 630
hgFindSpec.sql 2023-03-28 13:46 1.8K
grp.txt.gz 2014-03-02 03:40 208
grp.sql 2014-03-02 03:40 1.4K
gc5Base.txt.gz 2007-08-03 15:33 706K
gc5Base.sql 2007-08-03 15:33 1.7K
gbLoaded.txt.gz 2020-08-21 00:04 43K
gbLoaded.sql 2020-08-21 00:04 1.6K
estOrientInfo.txt.gz 2016-06-05 09:11 270K
estOrientInfo.sql 2016-06-05 09:11 1.8K
ctgPos2.txt.gz 2007-08-03 15:31 373K
ctgPos2.sql 2007-08-03 15:31 1.4K
chromInfo.txt.gz 2007-08-03 15:31 70
chromInfo.sql 2007-08-03 15:31 1.2K
chrUn_rmsk.txt.gz 2007-08-03 15:31 616K
chrUn_rmsk.sql 2007-08-03 15:31 1.9K
chrUn_gold.txt.gz 2007-08-03 15:31 162K
chrUn_gold.sql 2007-08-03 15:31 1.6K
chrUn_gap.txt.gz 2007-08-03 15:31 348K
chrUn_gap.sql 2007-08-03 15:31 1.5K
chrUn_chainPriPac1Link.txt.gz 2007-08-03 15:31 8.8M
chrUn_chainPriPac1Link.sql 2007-08-03 15:31 1.4K
chrUn_chainPriPac1.txt.gz 2007-08-03 15:31 3.2M
chrUn_chainPriPac1.sql 2007-08-03 15:31 1.7K
chrUn_chainCe4Link.txt.gz 2007-08-03 15:30 32M
chrUn_chainCe4Link.sql 2007-08-03 15:30 1.4K
chrUn_chainCe4.txt.gz 2007-08-03 15:29 6.7M
chrUn_chainCe4.sql 2007-08-03 15:29 1.7K
chrUn_chainCb3Link.txt.gz 2007-08-03 15:28 131M
chrUn_chainCb3Link.sql 2007-08-03 15:26 1.4K
chrUn_chainCb3.txt.gz 2007-08-03 15:26 42M
chrUn_chainCb3.sql 2007-08-03 15:25 1.7K
chrUn_chainCaePb1Link.txt.gz 2007-08-03 15:18 471M
chrUn_chainCaePb1Link.sql 2007-08-03 15:12 1.4K
chrUn_chainCaePb1.txt.gz 2007-08-03 15:09 199M
chrUn_chainCaePb1.sql 2007-08-03 15:06 1.7K
blastCe4SG.txt.gz 2007-08-03 15:06 1.8M
blastCe4SG.sql 2007-08-03 15:06 2.1K
bigFiles.txt.gz 2024-11-24 03:12 33
bigFiles.sql 2024-11-24 03:12 1.4K
augustusGene.txt.gz 2015-07-26 10:40 2.1M
augustusGene.sql 2015-07-26 10:40 1.9K
all_mrna.txt.gz 2016-05-15 07:46 15K
all_mrna.sql 2016-05-15 07:46 2.1K
all_est.txt.gz 2016-06-05 09:11 1.3M
all_est.sql 2016-06-05 09:11 2.1K