This directory contains a dump of the UCSC genome annotation database for
the Jan. 2007 assembly of the C. brenneri genome (UCSC version caePb1,
WUSTL School of Medicine GSC version 4.0). The annotations were generated by
UCSC and collaborators worldwide.
Various strains of this Caenorhabditis are named Caenorhabditis n. sp. 4.
PB2801,
LKC28, CB5161, SB129, SB280.
This assembly was produced by the Genome Sequencing Center at
the Washington University School of Medicine in St. Louis (WUSTL).
For more information on the C. brenneri genome, see the project website:
http://genome.wustl.edu/genome.cgi?GENOME=Caenorhabditis%20brenneri.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=caePb1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
---------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/caePb1/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
------------------------------------------------------------------
The C. brenneri sequence is made freely available to the community by the
Genome Sequencing Center at the WUSTL School of Medicine. Please see the
WUSTL data use policy at http://genome.wustl.edu/data.cgi for data use
restrictions and citation information.
Name Last modified Size Description
Parent Directory -
all_mrna.sql 2016-06-05 09:09 2.1K
all_mrna.txt.gz 2016-06-05 09:09 9.8K
augustusGene.sql 2015-07-26 10:34 1.9K
augustusGene.txt.gz 2015-07-26 10:34 2.2M
bigFiles.sql 2024-11-24 03:13 1.4K
bigFiles.txt.gz 2024-11-24 03:13 33
blastCe4SG.sql 2007-08-02 11:27 2.1K
blastCe4SG.txt.gz 2007-08-02 11:27 2.2M
chrUn_chainCaeRem2.sql 2007-08-04 10:35 1.7K
chrUn_chainCaeRem2.txt.gz 2007-08-04 10:38 200M
chrUn_chainCaeRem2Link.sql 2007-08-03 14:24 1.4K
chrUn_chainCaeRem2Link.txt.gz 2007-08-03 14:33 474M
chrUn_chainCb3.sql 2007-08-03 14:41 1.7K
chrUn_chainCb3.txt.gz 2007-08-03 14:41 5.2M
chrUn_chainCb3Link.sql 2007-08-03 14:41 1.4K
chrUn_chainCb3Link.txt.gz 2007-08-03 14:42 27M
chrUn_chainCe4.sql 2007-08-03 14:42 1.7K
chrUn_chainCe4.txt.gz 2007-08-03 14:47 188M
chrUn_chainCe4Link.sql 2007-08-03 14:50 1.4K
chrUn_chainCe4Link.txt.gz 2007-08-03 14:55 295M
chrUn_chainPriPac1.sql 2007-08-03 14:59 1.7K
chrUn_chainPriPac1.txt.gz 2007-08-03 15:00 30M
chrUn_chainPriPac1Link.sql 2007-08-03 15:00 1.4K
chrUn_chainPriPac1Link.txt.gz 2007-08-03 15:01 55M
chrUn_gap.sql 2007-08-03 15:02 1.5K
chrUn_gap.txt.gz 2007-08-03 15:02 379K
chrUn_gold.sql 2007-08-03 15:02 1.6K
chrUn_gold.txt.gz 2007-08-03 15:02 178K
chrUn_rmsk.sql 2007-08-03 15:02 1.9K
chrUn_rmsk.txt.gz 2007-08-03 15:02 1.4M
chromInfo.sql 2007-08-03 15:02 1.2K
chromInfo.txt.gz 2007-08-03 15:02 69
ctgPos2.sql 2007-08-03 15:02 1.4K
ctgPos2.txt.gz 2007-08-03 15:02 396K
gbLoaded.sql 2020-08-20 23:58 1.6K
gbLoaded.txt.gz 2020-08-20 23:58 15K
gc5Base.sql 2007-08-03 15:03 1.7K
gc5Base.txt.gz 2007-08-03 15:03 881K
grp.sql 2014-03-02 03:40 1.4K
grp.txt.gz 2014-03-02 03:40 208
hgFindSpec.sql 2023-03-28 13:46 1.8K
hgFindSpec.txt.gz 2023-03-28 13:46 638
history.sql 2007-08-03 15:03 1.4K
history.txt.gz 2007-08-03 15:03 536
microsat.sql 2015-08-23 10:49 1.5K
microsat.txt.gz 2015-08-23 10:49 8.1K
mrnaOrientInfo.sql 2016-06-05 09:09 1.8K
mrnaOrientInfo.txt.gz 2016-06-05 09:09 3.3K
netCaeRem2.sql 2007-08-03 15:04 2.2K
netCaeRem2.txt.gz 2007-08-03 15:04 8.1M
netCb3.sql 2007-08-03 15:04 2.2K
netCb3.txt.gz 2007-08-03 15:04 4.8M
netCe4.sql 2007-08-03 15:04 2.2K
netCe4.txt.gz 2007-08-03 15:04 6.6M
netPriPac1.sql 2007-08-03 15:04 2.2K
netPriPac1.txt.gz 2007-08-03 15:04 2.0M
quality.sql 2007-08-03 15:04 1.7K
quality.txt.gz 2007-08-03 15:04 3.6M
simpleRepeat.sql 2007-08-03 15:05 2.0K
simpleRepeat.txt.gz 2007-08-03 15:05 1.1M
tRNAs.sql 2012-03-18 17:38 1.7K
tRNAs.txt.gz 2012-03-18 17:38 25K
tableDescriptions.sql 2024-11-23 02:03 1.4K
tableDescriptions.txt.gz 2024-11-23 02:03 5.0K
tableList.sql 2024-11-24 03:13 1.6K
tableList.txt.gz 2024-11-24 03:13 2.6K
trackDb.sql 2023-03-28 13:46 2.1K
trackDb.txt.gz 2023-03-28 13:46 15K
windowmaskerSdust.sql 2007-08-03 15:05 1.3K
windowmaskerSdust.txt.gz 2007-08-03 15:05 9.1M
xenoMrna.sql 2016-02-21 10:41 2.3K
xenoMrna.txt.gz 2016-02-21 10:41 98M
xenoRefFlat.sql 2020-08-20 23:58 1.7K
xenoRefFlat.txt.gz 2020-08-20 23:58 11M
xenoRefGene.sql 2020-08-20 23:56 2.0K
xenoRefGene.txt.gz 2020-08-20 23:56 13M
xenoRefSeqAli.sql 2020-08-20 23:58 2.1K
xenoRefSeqAli.txt.gz 2020-08-20 23:58 14M