This directory contains a dump of the UCSC genome annotation database for
the August 2006 assembly of the cow genome (bosTau3, Baylor Release 3.1).
The annotations were generated by UCSC and collaborators worldwide.
This assembly was produced by the Baylor College of Medicine Human Genome Sequencing Center.
For more information on the cow genome, see the project website: http://www.hgsc.bcm.tmc.edu.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=bosTau3
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/bosTau3/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
For conditions of use regarding the Cow genome sequence data, see
http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html .
All the files and tables in this directory are freely usable for any purpose.
Name Last modified Size Description
Parent Directory -
bigFiles.txt.gz 2024-10-27 03:40 33
extFile.txt.gz 2007-08-21 19:05 68
grp.txt.gz 2014-03-02 03:37 208
snp127ExceptionDesc.txt.gz 2007-08-21 19:18 324
history.txt.gz 2007-08-21 19:08 656
hgFindSpec.txt.gz 2023-03-28 13:46 1.0K
ensPep.sql 2008-04-25 03:16 1.1K
geneidPep.sql 2008-04-03 03:13 1.1K
genscanPep.sql 2007-08-21 19:08 1.2K
snpSeq.sql 2007-08-21 19:18 1.2K
chromInfo.sql 2007-08-21 19:05 1.2K
snp127ExceptionDesc.sql 2007-08-21 19:18 1.2K
extFile.sql 2007-08-21 19:05 1.3K
ensGtp.sql 2008-04-25 03:16 1.3K
snp127Exceptions.sql 2007-08-21 19:18 1.3K
bigFiles.sql 2024-10-27 03:40 1.4K
grp.sql 2014-03-02 03:37 1.4K
history.sql 2007-08-21 19:08 1.4K
chainMm9Link.sql 2007-10-18 17:36 1.4K
chainRn4Link.sql 2007-08-21 18:53 1.4K
chainHg18Link.sql 2007-08-21 18:16 1.4K
tableDescriptions.sql 2024-10-26 02:03 1.4K
genscanSubopt.sql 2007-08-21 19:08 1.5K
gap.sql 2007-08-21 19:05 1.5K
tableList.sql 2024-10-27 03:40 1.6K
genscan.sql 2007-08-21 19:08 1.6K
gold.sql 2007-08-21 19:08 1.6K
gbLoaded.sql 2020-08-20 22:20 1.6K
cpgIslandExt.sql 2007-08-21 19:05 1.6K
chainMm9.sql 2007-10-18 18:04 1.6K
chainRn4.sql 2007-08-21 18:52 1.6K
chainHg18.sql 2007-08-21 18:13 1.7K
cpgIslandExtUnmasked.sql 2014-06-01 08:25 1.7K
gc5Base.sql 2007-08-21 19:07 1.7K
quality.sql 2007-08-21 19:14 1.7K
refFlat.sql 2020-08-20 22:14 1.7K
xenoRefFlat.sql 2020-08-20 22:14 1.7K
hgFindSpec.sql 2023-03-28 13:46 1.8K
estOrientInfo.sql 2016-06-05 09:03 1.8K
mrnaOrientInfo.sql 2020-08-20 22:14 1.8K
rmsk.sql 2007-08-21 19:15 1.9K
geneid.sql 2008-04-03 03:13 1.9K
ensGene.sql 2008-04-25 03:16 1.9K
mgcGenes.sql 2020-03-01 04:51 1.9K
sgpGene.sql 2007-12-23 15:48 1.9K
augustusGene.sql 2015-07-26 10:13 1.9K
refGene.sql 2020-08-20 22:14 1.9K
xenoRefGene.sql 2020-08-20 22:14 2.0K
simpleRepeat.sql 2007-08-21 19:18 2.0K
trackDb.sql 2023-03-28 13:46 2.1K
all_est.sql 2016-06-05 09:03 2.1K
intronEst.sql 2016-06-05 09:02 2.1K
mgcFullMrna.sql 2020-03-01 04:52 2.1K
all_mrna.sql 2020-08-20 21:54 2.1K
refSeqAli.sql 2020-08-20 22:20 2.1K
blastHg18KG.sql 2007-08-21 18:13 2.1K
xenoRefSeqAli.sql 2020-08-20 22:20 2.1K
netMm9.sql 2007-10-18 18:01 2.2K
netRn4.sql 2007-08-21 19:12 2.2K
netHg18.sql 2007-08-21 19:09 2.2K
snp127.sql 2007-08-21 19:18 2.3K
xenoMrna.sql 2016-02-21 09:58 2.3K
tableList.txt.gz 2024-10-27 03:40 3.7K
tableDescriptions.txt.gz 2024-10-26 02:03 6.1K
snp127Exceptions.txt.gz 2007-08-21 19:18 13K
snpSeq.txt.gz 2007-08-21 19:18 13K
snp127.txt.gz 2007-08-21 19:18 30K
trackDb.txt.gz 2023-03-28 13:46 31K
gbLoaded.txt.gz 2020-08-20 22:20 43K
chromInfo.txt.gz 2007-08-21 19:05 64K
ensGtp.txt.gz 2008-04-25 03:16 297K
mrnaOrientInfo.txt.gz 2020-08-20 22:14 594K
cpgIslandExt.txt.gz 2007-08-21 19:05 801K
mgcGenes.txt.gz 2020-03-01 04:51 815K
cpgIslandExtUnmasked.txt.gz 2014-06-01 08:25 888K
mgcFullMrna.txt.gz 2020-03-01 04:52 920K
gap.txt.gz 2007-08-21 19:05 936K
refFlat.txt.gz 2020-08-20 22:14 1.4M
refGene.txt.gz 2020-08-20 22:14 1.5M
refSeqAli.txt.gz 2020-08-20 22:20 1.5M
all_mrna.txt.gz 2020-08-20 21:54 1.6M
gold.txt.gz 2007-08-21 19:08 2.2M
augustusGene.txt.gz 2015-07-26 10:13 2.3M
ensGene.txt.gz 2008-04-25 03:16 2.4M
sgpGene.txt.gz 2007-12-23 15:48 2.6M
geneid.txt.gz 2008-04-03 03:13 2.7M
genscan.txt.gz 2007-08-21 19:08 3.2M
blastHg18KG.txt.gz 2007-08-21 18:13 3.5M
genscanSubopt.txt.gz 2007-08-21 19:08 6.3M
ensPep.txt.gz 2008-04-25 03:16 7.3M
simpleRepeat.txt.gz 2007-08-21 19:18 7.7M
geneidPep.txt.gz 2008-04-03 03:13 8.2M
genscanPep.txt.gz 2007-08-21 19:08 11M
gc5Base.txt.gz 2007-08-21 19:08 11M
estOrientInfo.txt.gz 2016-06-05 09:03 20M
xenoRefFlat.txt.gz 2020-08-20 22:14 34M
xenoRefSeqAli.txt.gz 2020-08-20 22:20 37M
intronEst.txt.gz 2016-06-05 09:02 37M
xenoRefGene.txt.gz 2020-08-20 22:14 38M
netRn4.txt.gz 2007-08-21 19:13 53M
netMm9.txt.gz 2007-10-18 18:03 55M
quality.txt.gz 2007-08-21 19:15 56M
chainRn4.txt.gz 2007-08-21 18:52 58M
all_est.txt.gz 2016-06-05 09:03 64M
netHg18.txt.gz 2007-08-21 19:10 67M
chainMm9.txt.gz 2007-10-18 18:05 69M
rmsk.txt.gz 2007-08-21 19:17 134M
chainHg18.txt.gz 2007-08-21 18:15 153M
xenoMrna.txt.gz 2016-02-21 09:59 333M
chainRn4Link.txt.gz 2007-08-21 18:59 464M
chainMm9Link.txt.gz 2007-10-18 17:48 509M
chainHg18Link.txt.gz 2007-08-21 18:25 773M