This directory contains a dump of the UCSC genome annotation database for
the August 2006 assembly of the cow genome (bosTau3, Baylor Release 3.1).
The annotations were generated by UCSC and collaborators worldwide.
This assembly was produced by the Baylor College of Medicine Human Genome Sequencing Center.
For more information on the cow genome, see the project website: http://www.hgsc.bcm.tmc.edu.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=bosTau3
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
---------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/bosTau3/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
For conditions of use regarding the Cow genome sequence data, see
http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html .
All the files and tables in this directory are freely usable for any purpose.
Name Last modified Size Description
Parent Directory -
bigFiles.txt.gz 2024-11-24 03:26 33
bigFiles.sql 2024-11-24 03:26 1.4K
tableList.txt.gz 2024-11-24 03:26 3.7K
tableList.sql 2024-11-24 03:26 1.6K
tableDescriptions.txt.gz 2024-11-23 02:03 6.1K
tableDescriptions.sql 2024-11-23 02:03 1.4K
hgFindSpec.txt.gz 2023-03-28 13:46 1.0K
hgFindSpec.sql 2023-03-28 13:46 1.8K
trackDb.txt.gz 2023-03-28 13:46 31K
trackDb.sql 2023-03-28 13:46 2.1K
gbLoaded.txt.gz 2020-08-20 22:20 43K
gbLoaded.sql 2020-08-20 22:20 1.6K
xenoRefSeqAli.txt.gz 2020-08-20 22:20 37M
xenoRefSeqAli.sql 2020-08-20 22:20 2.1K
refSeqAli.txt.gz 2020-08-20 22:20 1.5M
refSeqAli.sql 2020-08-20 22:20 2.1K
mrnaOrientInfo.txt.gz 2020-08-20 22:14 594K
mrnaOrientInfo.sql 2020-08-20 22:14 1.8K
xenoRefFlat.txt.gz 2020-08-20 22:14 34M
xenoRefFlat.sql 2020-08-20 22:14 1.7K
xenoRefGene.txt.gz 2020-08-20 22:14 38M
xenoRefGene.sql 2020-08-20 22:14 2.0K
refFlat.txt.gz 2020-08-20 22:14 1.4M
refFlat.sql 2020-08-20 22:14 1.7K
refGene.txt.gz 2020-08-20 22:14 1.5M
refGene.sql 2020-08-20 22:14 1.9K
all_mrna.txt.gz 2020-08-20 21:54 1.6M
all_mrna.sql 2020-08-20 21:54 2.1K
mgcFullMrna.txt.gz 2020-03-01 04:52 920K
mgcFullMrna.sql 2020-03-01 04:52 2.1K
mgcGenes.txt.gz 2020-03-01 04:51 815K
mgcGenes.sql 2020-03-01 04:51 1.9K
all_est.txt.gz 2016-06-05 09:03 64M
all_est.sql 2016-06-05 09:03 2.1K
estOrientInfo.txt.gz 2016-06-05 09:03 20M
estOrientInfo.sql 2016-06-05 09:03 1.8K
intronEst.txt.gz 2016-06-05 09:02 37M
intronEst.sql 2016-06-05 09:02 2.1K
xenoMrna.txt.gz 2016-02-21 09:59 333M
xenoMrna.sql 2016-02-21 09:58 2.3K
augustusGene.txt.gz 2015-07-26 10:13 2.3M
augustusGene.sql 2015-07-26 10:13 1.9K
cpgIslandExtUnmasked.txt.gz 2014-06-01 08:25 888K
cpgIslandExtUnmasked.sql 2014-06-01 08:25 1.7K
grp.txt.gz 2014-03-02 03:37 208
grp.sql 2014-03-02 03:37 1.4K
ensPep.txt.gz 2008-04-25 03:16 7.3M
ensPep.sql 2008-04-25 03:16 1.1K
ensGtp.txt.gz 2008-04-25 03:16 297K
ensGtp.sql 2008-04-25 03:16 1.3K
ensGene.txt.gz 2008-04-25 03:16 2.4M
ensGene.sql 2008-04-25 03:16 1.9K
geneidPep.txt.gz 2008-04-03 03:13 8.2M
geneidPep.sql 2008-04-03 03:13 1.1K
geneid.txt.gz 2008-04-03 03:13 2.7M
geneid.sql 2008-04-03 03:13 1.9K
sgpGene.txt.gz 2007-12-23 15:48 2.6M
sgpGene.sql 2007-12-23 15:48 1.9K
chainMm9.txt.gz 2007-10-18 18:05 69M
chainMm9.sql 2007-10-18 18:04 1.6K
netMm9.txt.gz 2007-10-18 18:03 55M
netMm9.sql 2007-10-18 18:01 2.2K
chainMm9Link.txt.gz 2007-10-18 17:48 509M
chainMm9Link.sql 2007-10-18 17:36 1.4K
snpSeq.txt.gz 2007-08-21 19:18 13K
snpSeq.sql 2007-08-21 19:18 1.2K
snp127Exceptions.txt.gz 2007-08-21 19:18 13K
snp127Exceptions.sql 2007-08-21 19:18 1.3K
snp127ExceptionDesc.txt.gz 2007-08-21 19:18 324
snp127ExceptionDesc.sql 2007-08-21 19:18 1.2K
snp127.txt.gz 2007-08-21 19:18 30K
snp127.sql 2007-08-21 19:18 2.3K
simpleRepeat.txt.gz 2007-08-21 19:18 7.7M
simpleRepeat.sql 2007-08-21 19:18 2.0K
rmsk.txt.gz 2007-08-21 19:17 134M
rmsk.sql 2007-08-21 19:15 1.9K
quality.txt.gz 2007-08-21 19:15 56M
quality.sql 2007-08-21 19:14 1.7K
netRn4.txt.gz 2007-08-21 19:13 53M
netRn4.sql 2007-08-21 19:12 2.2K
netHg18.txt.gz 2007-08-21 19:10 67M
netHg18.sql 2007-08-21 19:09 2.2K
history.txt.gz 2007-08-21 19:08 656
history.sql 2007-08-21 19:08 1.4K
gold.txt.gz 2007-08-21 19:08 2.2M
gold.sql 2007-08-21 19:08 1.6K
genscanSubopt.txt.gz 2007-08-21 19:08 6.3M
genscanSubopt.sql 2007-08-21 19:08 1.5K
genscanPep.txt.gz 2007-08-21 19:08 11M
genscanPep.sql 2007-08-21 19:08 1.2K
genscan.txt.gz 2007-08-21 19:08 3.2M
genscan.sql 2007-08-21 19:08 1.6K
gc5Base.txt.gz 2007-08-21 19:08 11M
gc5Base.sql 2007-08-21 19:07 1.7K
gap.txt.gz 2007-08-21 19:05 936K
gap.sql 2007-08-21 19:05 1.5K
extFile.txt.gz 2007-08-21 19:05 68
extFile.sql 2007-08-21 19:05 1.3K
cpgIslandExt.txt.gz 2007-08-21 19:05 801K
cpgIslandExt.sql 2007-08-21 19:05 1.6K
chromInfo.txt.gz 2007-08-21 19:05 64K
chromInfo.sql 2007-08-21 19:05 1.2K
chainRn4Link.txt.gz 2007-08-21 18:59 464M
chainRn4Link.sql 2007-08-21 18:53 1.4K
chainRn4.txt.gz 2007-08-21 18:52 58M
chainRn4.sql 2007-08-21 18:52 1.6K
chainHg18Link.txt.gz 2007-08-21 18:25 773M
chainHg18Link.sql 2007-08-21 18:16 1.4K
chainHg18.txt.gz 2007-08-21 18:15 153M
chainHg18.sql 2007-08-21 18:13 1.7K
blastHg18KG.txt.gz 2007-08-21 18:13 3.5M
blastHg18KG.sql 2007-08-21 18:13 2.1K