This directory contains a dump of the UCSC genome annotation database for
the August 2006 assembly of the cow genome (bosTau3, Baylor Release 3.1).
The annotations were generated by UCSC and collaborators worldwide.
This assembly was produced by the Baylor College of Medicine Human Genome Sequencing Center.
For more information on the cow genome, see the project website: http://www.hgsc.bcm.tmc.edu.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=bosTau3
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
---------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/bosTau3/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
For conditions of use regarding the Cow genome sequence data, see
http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html .
All the files and tables in this directory are freely usable for any purpose.
Name Last modified Size Description
Parent Directory -
all_est.sql 2016-06-05 09:03 2.1K
all_est.txt.gz 2016-06-05 09:03 64M
all_mrna.sql 2020-08-20 21:54 2.1K
all_mrna.txt.gz 2020-08-20 21:54 1.6M
augustusGene.sql 2015-07-26 10:13 1.9K
augustusGene.txt.gz 2015-07-26 10:13 2.3M
bigFiles.sql 2024-11-17 03:35 1.4K
bigFiles.txt.gz 2024-11-17 03:35 33
blastHg18KG.sql 2007-08-21 18:13 2.1K
blastHg18KG.txt.gz 2007-08-21 18:13 3.5M
chainHg18.sql 2007-08-21 18:13 1.7K
chainHg18.txt.gz 2007-08-21 18:15 153M
chainHg18Link.sql 2007-08-21 18:16 1.4K
chainHg18Link.txt.gz 2007-08-21 18:25 773M
chainMm9.sql 2007-10-18 18:04 1.6K
chainMm9.txt.gz 2007-10-18 18:05 69M
chainMm9Link.sql 2007-10-18 17:36 1.4K
chainMm9Link.txt.gz 2007-10-18 17:48 509M
chainRn4.sql 2007-08-21 18:52 1.6K
chainRn4.txt.gz 2007-08-21 18:52 58M
chainRn4Link.sql 2007-08-21 18:53 1.4K
chainRn4Link.txt.gz 2007-08-21 18:59 464M
chromInfo.sql 2007-08-21 19:05 1.2K
chromInfo.txt.gz 2007-08-21 19:05 64K
cpgIslandExt.sql 2007-08-21 19:05 1.6K
cpgIslandExt.txt.gz 2007-08-21 19:05 801K
cpgIslandExtUnmasked.sql 2014-06-01 08:25 1.7K
cpgIslandExtUnmasked.txt.gz 2014-06-01 08:25 888K
ensGene.sql 2008-04-25 03:16 1.9K
ensGene.txt.gz 2008-04-25 03:16 2.4M
ensGtp.sql 2008-04-25 03:16 1.3K
ensGtp.txt.gz 2008-04-25 03:16 297K
ensPep.sql 2008-04-25 03:16 1.1K
ensPep.txt.gz 2008-04-25 03:16 7.3M
estOrientInfo.sql 2016-06-05 09:03 1.8K
estOrientInfo.txt.gz 2016-06-05 09:03 20M
extFile.sql 2007-08-21 19:05 1.3K
extFile.txt.gz 2007-08-21 19:05 68
gap.sql 2007-08-21 19:05 1.5K
gap.txt.gz 2007-08-21 19:05 936K
gbLoaded.sql 2020-08-20 22:20 1.6K
gbLoaded.txt.gz 2020-08-20 22:20 43K
gc5Base.sql 2007-08-21 19:07 1.7K
gc5Base.txt.gz 2007-08-21 19:08 11M
geneid.sql 2008-04-03 03:13 1.9K
geneid.txt.gz 2008-04-03 03:13 2.7M
geneidPep.sql 2008-04-03 03:13 1.1K
geneidPep.txt.gz 2008-04-03 03:13 8.2M
genscan.sql 2007-08-21 19:08 1.6K
genscan.txt.gz 2007-08-21 19:08 3.2M
genscanPep.sql 2007-08-21 19:08 1.2K
genscanPep.txt.gz 2007-08-21 19:08 11M
genscanSubopt.sql 2007-08-21 19:08 1.5K
genscanSubopt.txt.gz 2007-08-21 19:08 6.3M
gold.sql 2007-08-21 19:08 1.6K
gold.txt.gz 2007-08-21 19:08 2.2M
grp.sql 2014-03-02 03:37 1.4K
grp.txt.gz 2014-03-02 03:37 208
hgFindSpec.sql 2023-03-28 13:46 1.8K
hgFindSpec.txt.gz 2023-03-28 13:46 1.0K
history.sql 2007-08-21 19:08 1.4K
history.txt.gz 2007-08-21 19:08 656
intronEst.sql 2016-06-05 09:02 2.1K
intronEst.txt.gz 2016-06-05 09:02 37M
mgcFullMrna.sql 2020-03-01 04:52 2.1K
mgcFullMrna.txt.gz 2020-03-01 04:52 920K
mgcGenes.sql 2020-03-01 04:51 1.9K
mgcGenes.txt.gz 2020-03-01 04:51 815K
mrnaOrientInfo.sql 2020-08-20 22:14 1.8K
mrnaOrientInfo.txt.gz 2020-08-20 22:14 594K
netHg18.sql 2007-08-21 19:09 2.2K
netHg18.txt.gz 2007-08-21 19:10 67M
netMm9.sql 2007-10-18 18:01 2.2K
netMm9.txt.gz 2007-10-18 18:03 55M
netRn4.sql 2007-08-21 19:12 2.2K
netRn4.txt.gz 2007-08-21 19:13 53M
quality.sql 2007-08-21 19:14 1.7K
quality.txt.gz 2007-08-21 19:15 56M
refFlat.sql 2020-08-20 22:14 1.7K
refFlat.txt.gz 2020-08-20 22:14 1.4M
refGene.sql 2020-08-20 22:14 1.9K
refGene.txt.gz 2020-08-20 22:14 1.5M
refSeqAli.sql 2020-08-20 22:20 2.1K
refSeqAli.txt.gz 2020-08-20 22:20 1.5M
rmsk.sql 2007-08-21 19:15 1.9K
rmsk.txt.gz 2007-08-21 19:17 134M
sgpGene.sql 2007-12-23 15:48 1.9K
sgpGene.txt.gz 2007-12-23 15:48 2.6M
simpleRepeat.sql 2007-08-21 19:18 2.0K
simpleRepeat.txt.gz 2007-08-21 19:18 7.7M
snp127.sql 2007-08-21 19:18 2.3K
snp127.txt.gz 2007-08-21 19:18 30K
snp127ExceptionDesc.sql 2007-08-21 19:18 1.2K
snp127ExceptionDesc.txt.gz 2007-08-21 19:18 324
snp127Exceptions.sql 2007-08-21 19:18 1.3K
snp127Exceptions.txt.gz 2007-08-21 19:18 13K
snpSeq.sql 2007-08-21 19:18 1.2K
snpSeq.txt.gz 2007-08-21 19:18 13K
tableDescriptions.sql 2024-11-16 02:03 1.4K
tableDescriptions.txt.gz 2024-11-16 02:03 6.1K
tableList.sql 2024-11-17 03:35 1.6K
tableList.txt.gz 2024-11-17 03:35 3.7K
trackDb.sql 2023-03-28 13:46 2.1K
trackDb.txt.gz 2023-03-28 13:46 31K
xenoMrna.sql 2016-02-21 09:58 2.3K
xenoMrna.txt.gz 2016-02-21 09:59 333M
xenoRefFlat.sql 2020-08-20 22:14 1.7K
xenoRefFlat.txt.gz 2020-08-20 22:14 34M
xenoRefGene.sql 2020-08-20 22:14 2.0K
xenoRefGene.txt.gz 2020-08-20 22:14 38M
xenoRefSeqAli.sql 2020-08-20 22:20 2.1K
xenoRefSeqAli.txt.gz 2020-08-20 22:20 37M