This directory contains a dump of the UCSC genome annotation database
for the Mar. 2005 cow genome assembled by the Baylor College of Medicine
Human Genome Sequencing Center (bosTau2 BCM HGSC Btau_2.0). For more
information about this assembly, see the Baylor web page at
http://www.hgsc.bcm.tmc.edu/projects/bovine/.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=bosTau2
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this directory,
we recommend you use ftp rather than downloading the files via our website.
To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory
goldenPath/bosTau2/database/. To download multiple files, use the
"mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
Please review the restrictions on the use of the cow assembly data at
http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html.
Name Last modified Size Description
Parent Directory -
xenoRefSeqAli.txt.gz 2020-08-20 22:45 45M
xenoRefSeqAli.sql 2020-08-20 22:45 2.4K
xenoRefGene.txt.gz 2020-08-20 22:45 35M
xenoRefGene.sql 2020-08-20 22:45 1.8K
xenoRefFlat.txt.gz 2020-08-20 22:45 37M
xenoRefFlat.sql 2020-08-20 22:45 1.9K
xenoMrna.txt.gz 2013-11-03 07:21 33
xenoMrna.sql 2013-11-03 07:21 2.1K
trackDb.txt.gz 2023-03-28 13:46 27K
trackDb.sql 2023-03-28 13:46 2.1K
tableList.txt.gz 2024-11-24 03:21 3.1K
tableList.sql 2024-11-24 03:21 1.6K
tableDescriptions.txt.gz 2024-11-23 02:03 5.2K
tableDescriptions.sql 2024-11-23 02:03 1.4K
simpleRepeat.txt.gz 2005-10-05 09:14 10M
simpleRepeat.sql 2013-10-01 12:48 1.0K
sgpGene.txt.gz 2005-12-31 06:16 2.4M
sgpGene.sql 2013-10-01 12:48 1.0K
rmsk.txt.gz 2005-10-05 09:11 140M
rmsk.sql 2013-10-01 12:48 1.0K
refSeqAli.txt.gz 2020-08-20 22:45 1.6M
refSeqAli.sql 2020-08-20 22:45 2.3K
refGene.txt.gz 2020-08-20 22:45 1.6M
refGene.sql 2020-08-20 22:45 2.2K
refFlat.txt.gz 2020-08-20 22:45 1.4M
refFlat.sql 2020-08-20 22:45 1.9K
quality.txt.gz 2005-10-05 09:08 62M
quality.sql 2013-10-01 12:48 892
netRn4.txt.gz 2006-06-21 06:47 52M
netRn4.sql 2006-06-21 06:46 2.2K
netMm8.txt.gz 2006-05-10 06:44 54M
netMm8.sql 2013-10-01 12:48 1.3K
netHg18.txt.gz 2006-04-16 06:34 69M
netHg18.sql 2013-10-01 12:48 1.3K
mrnaOrientInfo.txt.gz 2020-08-20 22:45 704K
mrnaOrientInfo.sql 2020-08-20 22:45 1.9K
mgcGenes.txt.gz 2020-03-01 04:51 822K
mgcGenes.sql 2020-03-01 04:51 1.9K
mgcFullMrna.txt.gz 2020-03-01 04:51 950K
mgcFullMrna.sql 2020-03-01 04:51 2.3K
intronEst.txt.gz 2016-06-05 08:59 33M
intronEst.sql 2016-06-05 08:59 2.3K
history.txt.gz 2005-10-05 09:06 279
history.sql 2013-10-01 12:48 537
hgFindSpec.txt.gz 2023-03-28 13:46 871
hgFindSpec.sql 2023-03-28 13:46 1.8K
grp.txt.gz 2014-03-02 03:37 223
grp.sql 2014-03-02 03:37 1.4K
gold.txt.gz 2005-10-05 09:06 11M
gold.sql 2013-10-01 12:48 711
genscanPep.txt.gz 2005-10-05 09:05 11M
genscanPep.sql 2013-10-01 12:48 330
genscan.txt.gz 2005-10-05 09:05 3.2M
genscan.sql 2013-10-01 12:48 748
geneidPep.txt.gz 2005-10-28 05:23 7.9M
geneidPep.sql 2013-10-01 12:48 328
geneid.txt.gz 2005-10-28 05:23 3.7M
geneid.sql 2013-10-01 12:48 1.0K
gc5Base.txt.gz 2005-10-05 09:05 14M
gc5Base.sql 2013-10-01 12:48 891
gbLoaded.txt.gz 2020-08-20 22:45 207K
gbLoaded.sql 2020-08-20 22:45 1.7K
gap.txt.gz 2005-10-05 09:03 6.2M
gap.sql 2013-10-01 12:48 634
estOrientInfo.txt.gz 2016-06-05 09:00 21M
estOrientInfo.sql 2016-06-05 08:59 1.9K
cpgIslandExtUnmasked.txt.gz 2014-06-01 08:19 2.1M
cpgIslandExtUnmasked.sql 2014-06-01 08:19 1.7K
cpgIslandExt.txt.gz 2005-10-05 09:03 2.0M
cpgIslandExt.sql 2013-10-01 12:48 751
contigOrient.txt.gz 2005-10-05 09:03 1.5M
contigOrient.sql 2013-10-01 12:48 686
chromInfo.txt.gz 2005-10-05 09:02 279K
chromInfo.sql 2013-10-01 12:48 396
chainRn4Link.txt.gz 2006-06-21 06:41 455M
chainRn4Link.sql 2006-06-21 06:34 1.4K
chainRn4.txt.gz 2006-06-21 06:34 57M
chainRn4.sql 2006-06-21 06:33 1.6K
chainMm8Link.txt.gz 2006-05-10 06:37 440M
chainMm8Link.sql 2013-10-01 12:48 577
chainMm8.txt.gz 2006-05-10 06:30 53M
chainMm8.sql 2013-10-01 12:48 812
chainHg18Link.txt.gz 2006-04-16 06:29 441M
chainHg18Link.sql 2013-10-01 12:48 579
chainHg18.txt.gz 2006-04-16 06:25 36M
chainHg18.sql 2013-10-01 12:48 880
blastHg18KG.txt.gz 2007-03-01 07:13 2.9M
blastHg18KG.sql 2007-03-01 07:13 2.1K
bigFiles.txt.gz 2024-11-24 03:21 33
bigFiles.sql 2024-11-24 03:21 1.4K
augustusGene.txt.gz 2015-07-26 10:13 2.3M
augustusGene.sql 2015-07-26 10:13 1.9K
all_mrna.txt.gz 2020-08-20 22:23 1.8M
all_mrna.sql 2020-08-20 22:23 2.3K
all_est.txt.gz 2016-06-05 09:00 65M
all_est.sql 2016-06-05 09:00 2.3K