This directory contains a dump of the UCSC genome annotation database for the Sep. 2004 cow genome assembled by the Baylor College of Medicine Human Genome Sequencing Center (bosTau1, BCM HGSC Btau_1.0). For more information about this assembly, see the Baylor web page at http://www.hgsc.bcm.tmc.edu/projects/bovine/. Files included in this directory (updated nightly): - *.sql files: the MySQL commands used to create the tables. To see descriptions of the tables underlying Genome Browser annotation tracks, select the table in the Table Browser: http://genome.ucsc.edu/cgi-bin/hgTables?db=bosTau1 and click the "describe table schema" button. There is also a "view table schema" link on the configuration page for each track. - *.txt.gz files: the database tables in a tab-delimited format compressed with gzip. ---------------------------------------------------------------- If you plan to download a large file or multiple files from this directory, we recommend you use ftp rather than downloading the files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory goldenPath/bosTau1/database/. To download multiple files, use the "mget" command: mget <filename1> <filename2> ... - or - mget -a (to download all the files in the directory) Please review the restrictions on the use of the cow assembly data at http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html.
Name Last modified Size Description
Parent Directory - chainHg17Link.txt.gz 2008-03-25 13:51 689M chainMm6Link.txt.gz 2008-03-25 14:15 437M chainHg17.txt.gz 2008-03-25 13:37 133M rmsk.txt.gz 2008-03-25 14:40 101M netHg17.txt.gz 2008-03-25 14:33 68M chainMm6.txt.gz 2008-03-25 14:06 67M quality.txt.gz 2008-03-25 14:38 64M all_est.txt.gz 2008-03-25 13:34 55M netMm6.txt.gz 2008-03-25 14:35 53M gbSeq.txt.gz 2008-09-09 03:32 28M intronEst.txt.gz 2008-03-25 14:31 24M gbCdnaInfo.txt.gz 2008-09-09 03:34 21M estOrientInfo.txt.gz 2008-03-25 14:26 19M gc5Base.txt.gz 2008-03-25 14:29 17M xenoRefSeqAli.txt.gz 2008-09-09 03:33 16M gbStatus.txt.gz 2008-09-09 03:31 13M geneidPep.txt.gz 2008-03-25 14:30 12M xenoRefFlat.txt.gz 2008-09-09 03:30 12M xenoRefGene.txt.gz 2008-09-09 03:32 11M geneid.txt.gz 2008-03-25 14:30 10M gold.txt.gz 2008-03-25 14:30 10M genscanPep.txt.gz 2008-03-25 14:30 10M description.txt.gz 2008-09-09 03:31 9.9M simpleRepeat.txt.gz 2008-03-25 14:42 6.3M refLink.txt.gz 2008-09-09 03:32 5.8M mrnaClone.txt.gz 2008-03-25 14:31 5.1M author.txt.gz 2008-09-09 03:30 4.8M refSeqSummary.txt.gz 2008-09-09 03:31 4.7M contigAcc.txt.gz 2008-03-25 14:25 3.7M genscan.txt.gz 2008-03-25 14:30 3.2M productName.txt.gz 2008-09-09 03:30 3.2M geneName.txt.gz 2008-09-09 03:31 3.2M gap.txt.gz 2008-03-25 14:26 3.2M imageClone.txt.gz 2008-09-09 03:30 2.6M blastHg17KG.txt.gz 2008-03-25 13:35 2.4M chromInfo.txt.gz 2008-03-25 14:25 2.0M all_mrna.txt.gz 2008-09-09 03:33 1.9M cds.txt.gz 2008-09-09 03:33 1.5M refSeqStatus.txt.gz 2008-09-09 03:30 724K cpgIslandExt.txt.gz 2008-03-25 14:25 721K mrnaOrientInfo.txt.gz 2008-09-09 03:33 607K gbDelete_tmp.txt.gz 2008-03-25 14:27 157K gbLoaded.txt.gz 2008-09-09 03:31 57K library.txt.gz 2008-03-25 14:31 48K keyword.txt.gz 2008-09-09 03:29 24K trackDb.txt.gz 2008-06-01 03:15 12K tableDescriptions.txt.gz 2008-05-18 03:15 6.7K tissue.txt.gz 2008-08-05 03:49 6.3K mgcFullMrna.txt.gz 2008-03-25 14:43 3.4K gbMiscDiff.txt.gz 2008-08-19 03:40 2.9K gbCdnaInfo.sql 2008-09-09 03:33 2.6K mgcGenes.txt.gz 2008-03-25 14:43 2.5K xenoRefSeqAli.sql 2008-09-09 03:33 2.2K blastHg17KG.sql 2008-03-25 13:35 2.2K intronEst.sql 2008-03-25 14:30 2.2K all_mrna.sql 2008-09-09 03:33 2.2K all_est.sql 2008-03-25 13:33 2.2K netHg17.sql 2008-03-25 14:31 2.2K netMm6.sql 2008-03-25 14:34 2.2K mgcFullMrna.sql 2008-03-25 14:43 2.1K trackDb.sql 2008-06-01 03:15 2.0K gbExtFile.txt.gz 2008-09-09 03:31 2.0K simpleRepeat.sql 2008-03-25 14:42 2.0K geneid.sql 2008-03-25 14:29 1.9K rmsk.sql 2008-03-25 14:39 1.9K gbStatus.sql 2008-09-09 03:30 1.9K mgcGenes.sql 2008-03-25 14:43 1.9K development.txt.gz 2008-03-25 14:26 1.9K chainHg17.sql 2008-03-25 13:35 1.7K quality.sql 2008-03-25 14:36 1.7K gc5Base.sql 2008-03-25 14:29 1.7K chainMm6.sql 2008-03-25 14:05 1.7K mrnaOrientInfo.sql 2008-09-09 03:33 1.7K estOrientInfo.sql 2008-03-25 14:26 1.7K xenoRefFlat.sql 2008-09-09 03:29 1.7K hgFindSpec.sql 2008-03-25 14:30 1.7K gold.sql 2008-03-25 14:30 1.6K refLink.sql 2008-09-09 03:32 1.6K gbSeq.sql 2008-09-09 03:32 1.6K xenoRefGene.sql 2008-09-09 03:31 1.6K cpgIslandExt.sql 2008-03-25 14:25 1.6K genscan.sql 2008-03-25 14:30 1.6K gap.sql 2008-03-25 14:26 1.6K gbLoaded.sql 2008-09-09 03:31 1.5K history.sql 2008-03-25 14:30 1.4K refSeqStatus.sql 2008-09-09 03:30 1.4K chainHg17Link.sql 2008-03-25 13:40 1.4K chainMm6Link.sql 2008-03-25 14:07 1.4K source.txt.gz 2008-09-09 03:30 1.4K imageClone.sql 2008-09-09 03:30 1.3K refSeqSummary.sql 2008-09-09 03:31 1.3K gbMiscDiff.sql 2008-08-19 03:40 1.3K productName.sql 2008-09-09 03:30 1.2K development.sql 2008-03-25 14:26 1.2K description.sql 2008-09-09 03:31 1.2K gbExtFile.sql 2008-09-09 03:31 1.2K tableDescriptions.sql 2008-05-18 03:15 1.2K mrnaClone.sql 2008-03-25 14:31 1.2K organism.sql 2008-09-09 03:29 1.2K geneName.sql 2008-09-09 03:31 1.2K library.sql 2008-03-25 14:31 1.2K keyword.sql 2008-09-09 03:29 1.2K tissue.sql 2008-08-05 03:49 1.2K source.sql 2008-09-09 03:30 1.2K author.sql 2008-09-09 03:30 1.2K cell.sql 2008-05-06 03:29 1.2K sex.sql 2008-03-25 14:42 1.2K cds.sql 2008-09-09 03:33 1.2K chromInfo.sql 2008-03-25 14:25 1.2K gbWarn.sql 2008-05-06 03:32 1.2K grp.sql 2008-03-25 14:30 1.2K contigAcc.sql 2008-03-25 14:25 1.2K genscanPep.sql 2008-03-25 14:30 1.2K gbDelete_tmp.sql 2008-03-25 14:27 1.2K geneidPep.sql 2008-03-25 14:30 1.1K cell.txt.gz 2008-05-06 03:29 1.1K organism.txt.gz 2008-09-09 03:29 1.0K hgFindSpec.txt.gz 2008-03-25 14:30 603 history.txt.gz 2008-03-25 14:30 312 grp.txt.gz 2008-03-25 14:30 204 sex.txt.gz 2008-03-25 14:42 194 gbWarn.txt.gz 2008-05-06 03:32 31