This directory contains a dump of the UCSC genome annotation database
for the Sep. 2004 cow genome assembled by the Baylor College of Medicine
Human Genome Sequencing Center (bosTau1, BCM HGSC Btau_1.0). For more
information about this assembly, see the Baylor web page at
http://www.hgsc.bcm.tmc.edu/projects/bovine/.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=bosTau1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this directory,
we recommend you use ftp rather than downloading the files via our website.
To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory
goldenPath/bosTau1/database/. To download multiple files, use the
"mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
Please review the restrictions on the use of the cow assembly data at
http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html.
Name Last modified Size Description
Parent Directory -
gbWarn.txt.gz 2008-05-06 03:32 31
sex.txt.gz 2008-03-25 14:42 194
grp.txt.gz 2008-03-25 14:30 204
history.txt.gz 2008-03-25 14:30 312
hgFindSpec.txt.gz 2008-03-25 14:30 603
organism.txt.gz 2008-09-09 03:29 1.0K
cell.txt.gz 2008-05-06 03:29 1.1K
geneidPep.sql 2008-03-25 14:30 1.1K
gbDelete_tmp.sql 2008-03-25 14:27 1.2K
genscanPep.sql 2008-03-25 14:30 1.2K
contigAcc.sql 2008-03-25 14:25 1.2K
grp.sql 2008-03-25 14:30 1.2K
gbWarn.sql 2008-05-06 03:32 1.2K
chromInfo.sql 2008-03-25 14:25 1.2K
cds.sql 2008-09-09 03:33 1.2K
sex.sql 2008-03-25 14:42 1.2K
cell.sql 2008-05-06 03:29 1.2K
author.sql 2008-09-09 03:30 1.2K
source.sql 2008-09-09 03:30 1.2K
tissue.sql 2008-08-05 03:49 1.2K
keyword.sql 2008-09-09 03:29 1.2K
library.sql 2008-03-25 14:31 1.2K
geneName.sql 2008-09-09 03:31 1.2K
organism.sql 2008-09-09 03:29 1.2K
mrnaClone.sql 2008-03-25 14:31 1.2K
tableDescriptions.sql 2008-05-18 03:15 1.2K
gbExtFile.sql 2008-09-09 03:31 1.2K
description.sql 2008-09-09 03:31 1.2K
development.sql 2008-03-25 14:26 1.2K
productName.sql 2008-09-09 03:30 1.2K
gbMiscDiff.sql 2008-08-19 03:40 1.3K
refSeqSummary.sql 2008-09-09 03:31 1.3K
imageClone.sql 2008-09-09 03:30 1.3K
source.txt.gz 2008-09-09 03:30 1.4K
chainMm6Link.sql 2008-03-25 14:07 1.4K
chainHg17Link.sql 2008-03-25 13:40 1.4K
refSeqStatus.sql 2008-09-09 03:30 1.4K
history.sql 2008-03-25 14:30 1.4K
gbLoaded.sql 2008-09-09 03:31 1.5K
gap.sql 2008-03-25 14:26 1.6K
genscan.sql 2008-03-25 14:30 1.6K
cpgIslandExt.sql 2008-03-25 14:25 1.6K
xenoRefGene.sql 2008-09-09 03:31 1.6K
gbSeq.sql 2008-09-09 03:32 1.6K
refLink.sql 2008-09-09 03:32 1.6K
gold.sql 2008-03-25 14:30 1.6K
hgFindSpec.sql 2008-03-25 14:30 1.7K
xenoRefFlat.sql 2008-09-09 03:29 1.7K
estOrientInfo.sql 2008-03-25 14:26 1.7K
mrnaOrientInfo.sql 2008-09-09 03:33 1.7K
chainMm6.sql 2008-03-25 14:05 1.7K
gc5Base.sql 2008-03-25 14:29 1.7K
quality.sql 2008-03-25 14:36 1.7K
chainHg17.sql 2008-03-25 13:35 1.7K
development.txt.gz 2008-03-25 14:26 1.9K
mgcGenes.sql 2008-03-25 14:43 1.9K
gbStatus.sql 2008-09-09 03:30 1.9K
rmsk.sql 2008-03-25 14:39 1.9K
geneid.sql 2008-03-25 14:29 1.9K
simpleRepeat.sql 2008-03-25 14:42 2.0K
gbExtFile.txt.gz 2008-09-09 03:31 2.0K
trackDb.sql 2008-06-01 03:15 2.0K
mgcFullMrna.sql 2008-03-25 14:43 2.1K
netMm6.sql 2008-03-25 14:34 2.2K
netHg17.sql 2008-03-25 14:31 2.2K
all_est.sql 2008-03-25 13:33 2.2K
all_mrna.sql 2008-09-09 03:33 2.2K
intronEst.sql 2008-03-25 14:30 2.2K
blastHg17KG.sql 2008-03-25 13:35 2.2K
xenoRefSeqAli.sql 2008-09-09 03:33 2.2K
mgcGenes.txt.gz 2008-03-25 14:43 2.5K
gbCdnaInfo.sql 2008-09-09 03:33 2.6K
gbMiscDiff.txt.gz 2008-08-19 03:40 2.9K
mgcFullMrna.txt.gz 2008-03-25 14:43 3.4K
tissue.txt.gz 2008-08-05 03:49 6.3K
tableDescriptions.txt.gz 2008-05-18 03:15 6.7K
trackDb.txt.gz 2008-06-01 03:15 12K
keyword.txt.gz 2008-09-09 03:29 24K
library.txt.gz 2008-03-25 14:31 48K
gbLoaded.txt.gz 2008-09-09 03:31 57K
gbDelete_tmp.txt.gz 2008-03-25 14:27 157K
mrnaOrientInfo.txt.gz 2008-09-09 03:33 607K
cpgIslandExt.txt.gz 2008-03-25 14:25 721K
refSeqStatus.txt.gz 2008-09-09 03:30 724K
cds.txt.gz 2008-09-09 03:33 1.5M
all_mrna.txt.gz 2008-09-09 03:33 1.9M
chromInfo.txt.gz 2008-03-25 14:25 2.0M
blastHg17KG.txt.gz 2008-03-25 13:35 2.4M
imageClone.txt.gz 2008-09-09 03:30 2.6M
gap.txt.gz 2008-03-25 14:26 3.2M
geneName.txt.gz 2008-09-09 03:31 3.2M
productName.txt.gz 2008-09-09 03:30 3.2M
genscan.txt.gz 2008-03-25 14:30 3.2M
contigAcc.txt.gz 2008-03-25 14:25 3.7M
refSeqSummary.txt.gz 2008-09-09 03:31 4.7M
author.txt.gz 2008-09-09 03:30 4.8M
mrnaClone.txt.gz 2008-03-25 14:31 5.1M
refLink.txt.gz 2008-09-09 03:32 5.8M
simpleRepeat.txt.gz 2008-03-25 14:42 6.3M
description.txt.gz 2008-09-09 03:31 9.9M
genscanPep.txt.gz 2008-03-25 14:30 10M
gold.txt.gz 2008-03-25 14:30 10M
geneid.txt.gz 2008-03-25 14:30 10M
xenoRefGene.txt.gz 2008-09-09 03:32 11M
xenoRefFlat.txt.gz 2008-09-09 03:30 12M
geneidPep.txt.gz 2008-03-25 14:30 12M
gbStatus.txt.gz 2008-09-09 03:31 13M
xenoRefSeqAli.txt.gz 2008-09-09 03:33 16M
gc5Base.txt.gz 2008-03-25 14:29 17M
estOrientInfo.txt.gz 2008-03-25 14:26 19M
gbCdnaInfo.txt.gz 2008-09-09 03:34 21M
intronEst.txt.gz 2008-03-25 14:31 24M
gbSeq.txt.gz 2008-09-09 03:32 28M
netMm6.txt.gz 2008-03-25 14:35 53M
all_est.txt.gz 2008-03-25 13:34 55M
quality.txt.gz 2008-03-25 14:38 64M
chainMm6.txt.gz 2008-03-25 14:06 67M
netHg17.txt.gz 2008-03-25 14:33 68M
rmsk.txt.gz 2008-03-25 14:40 101M
chainHg17.txt.gz 2008-03-25 13:37 133M
chainMm6Link.txt.gz 2008-03-25 14:15 437M
chainHg17Link.txt.gz 2008-03-25 13:51 689M