This directory contains the tables from the UCSC Genome Browser
database for the Apis mellifera Amel_2.0 assembly (apiMel2, Jan. 2005)
from the Baylor College of Medicine HGSC Honey Bee Genome Project.
For more information, see the Baylor website:
http://www.hgsc.bcm.tmc.edu/projects/honeybee/.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=apiMel2
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/apiMel2/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the annotations in this directory are freely usable for any purpose.
For conditions of use regarding the A. mellifera sequence data, see
http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html.
Name Last modified Size Description
Parent Directory -
bigFiles.txt.gz 2025-03-30 03:39 33
grp.txt.gz 2014-03-02 03:37 223
chromInfo.txt.gz 2005-02-23 16:08 244
ensPep.sql 2013-10-01 12:48 322
gbDelete_tmp.sql 2013-10-01 12:48 326
genscanPep.sql 2013-10-01 12:48 330
history.txt.gz 2005-02-23 16:08 357
chromInfo.sql 2013-10-01 12:48 396
history.sql 2013-10-01 12:48 537
scaffolds.sql 2013-10-01 12:48 592
gap.sql 2013-10-01 12:48 722
genscan.sql 2013-10-01 12:48 748
brhInparalog.sql 2013-10-01 12:48 756
gold.sql 2013-10-01 12:48 799
gc5Base.sql 2013-10-01 12:48 891
hgFindSpec.txt.gz 2024-08-05 16:56 1.0K
geneid.sql 2013-10-01 12:48 1.0K
ensGene.sql 2013-10-01 12:48 1.0K
modelRefGene.sql 2013-10-01 12:48 1.0K
rmsk.sql 2013-10-01 12:48 1.1K
simpleRepeat.sql 2013-10-01 12:48 1.1K
blastDm2FB.sql 2013-10-01 12:48 1.3K
blastHg17KG.sql 2013-10-01 12:48 1.3K
grp.sql 2014-03-02 03:37 1.4K
Group1_chainDm2Link.sql 2006-11-04 07:08 1.4K
Group2_chainDm2Link.sql 2006-11-04 07:08 1.4K
Group3_chainDm2Link.sql 2006-11-04 07:08 1.4K
Group4_chainDm2Link.sql 2006-11-04 07:08 1.4K
Group5_chainDm2Link.sql 2006-11-04 07:09 1.4K
Group6_chainDm2Link.sql 2006-11-04 07:09 1.4K
Group7_chainDm2Link.sql 2006-11-04 07:09 1.4K
Group8_chainDm2Link.sql 2006-11-04 07:09 1.4K
Group9_chainDm2Link.sql 2006-11-04 07:09 1.4K
Group10_chainDm2Link.sql 2006-11-04 07:08 1.4K
Group11_chainDm2Link.sql 2006-11-04 07:08 1.4K
Group12_chainDm2Link.sql 2006-11-04 07:08 1.4K
Group13_chainDm2Link.sql 2006-11-04 07:08 1.4K
Group14_chainDm2Link.sql 2006-11-04 07:08 1.4K
Group15_chainDm2Link.sql 2006-11-04 07:08 1.4K
Group16_chainDm2Link.sql 2006-11-04 07:08 1.4K
GroupUn_chainDm2Link.sql 2006-11-04 07:09 1.4K
bigFiles.sql 2025-03-30 03:39 1.4K
tableDescriptions.sql 2025-03-29 02:03 1.5K
microsat.sql 2015-08-23 09:54 1.5K
tableList.sql 2025-03-30 03:39 1.6K
Group1_chainDm2.sql 2006-11-04 07:08 1.7K
Group2_chainDm2.sql 2006-11-04 07:08 1.7K
Group3_chainDm2.sql 2006-11-04 07:08 1.7K
Group4_chainDm2.sql 2006-11-04 07:08 1.7K
Group5_chainDm2.sql 2006-11-04 07:09 1.7K
Group6_chainDm2.sql 2006-11-04 07:09 1.7K
Group7_chainDm2.sql 2006-11-04 07:09 1.7K
Group8_chainDm2.sql 2006-11-04 07:09 1.7K
Group9_chainDm2.sql 2006-11-04 07:09 1.7K
Group10_chainDm2.sql 2006-11-04 07:08 1.7K
Group11_chainDm2.sql 2006-11-04 07:08 1.7K
Group12_chainDm2.sql 2006-11-04 07:08 1.7K
Group13_chainDm2.sql 2006-11-04 07:08 1.7K
Group14_chainDm2.sql 2006-11-04 07:08 1.7K
Group15_chainDm2.sql 2006-11-04 07:08 1.7K
Group16_chainDm2.sql 2006-11-04 07:08 1.7K
GroupUn_chainDm2.sql 2006-11-04 07:09 1.7K
gbLoaded.sql 2020-08-18 05:22 1.7K
cpgIslandExt.sql 2024-08-05 11:24 1.7K
xenoRefFlat.sql 2020-08-18 05:07 1.7K
cpgIslandExtUnmasked.sql 2024-08-05 11:23 1.8K
hgFindSpec.sql 2024-08-05 16:56 1.8K
estOrientInfo.sql 2016-06-12 06:06 1.9K
mrnaOrientInfo.sql 2020-08-18 04:58 1.9K
augustusGene.sql 2015-07-26 10:11 1.9K
xenoRefGene.sql 2020-08-18 05:07 2.0K
trackDb.sql 2024-08-05 16:56 2.1K
xenoRefSeqAli.sql 2020-08-18 05:20 2.1K
netDm2.sql 2006-11-04 07:08 2.2K
all_mrna.sql 2020-08-18 04:58 2.4K
xenoMrna.sql 2020-08-18 04:58 2.4K
all_est.sql 2016-06-12 06:06 2.4K
intronEst.sql 2016-06-12 06:07 2.4K
tableList.txt.gz 2025-03-30 03:39 3.4K
tableDescriptions.txt.gz 2025-03-29 02:03 5.5K
trackDb.txt.gz 2024-08-05 16:56 28K
microsat.txt.gz 2015-08-23 09:54 52K
scaffolds.txt.gz 2005-03-02 05:07 95K
Group13_chainDm2.txt.gz 2006-11-04 07:08 112K
cpgIslandExt.txt.gz 2024-08-05 11:24 124K
Group16_chainDm2.txt.gz 2006-11-04 07:08 126K
cpgIslandExtUnmasked.txt.gz 2024-08-05 11:23 136K
Group15_chainDm2.txt.gz 2006-11-04 07:08 139K
Group12_chainDm2.txt.gz 2006-11-04 07:08 152K
Group14_chainDm2.txt.gz 2006-11-04 07:08 154K
Group9_chainDm2.txt.gz 2006-11-04 07:09 162K
Group10_chainDm2.txt.gz 2006-11-04 07:08 176K
gbDelete_tmp.txt.gz 2005-09-28 04:52 180K
Group8_chainDm2.txt.gz 2006-11-04 07:09 184K
gbLoaded.txt.gz 2020-08-18 05:22 202K
gap.txt.gz 2005-02-23 16:08 212K
Group4_chainDm2.txt.gz 2006-11-04 07:08 213K
Group11_chainDm2.txt.gz 2006-11-04 07:08 225K
Group6_chainDm2.txt.gz 2006-11-04 07:09 228K
Group7_chainDm2.txt.gz 2006-11-04 07:09 231K
Group2_chainDm2.txt.gz 2006-11-04 07:08 234K
Group5_chainDm2.txt.gz 2006-11-04 07:09 243K
gold.txt.gz 2005-02-23 16:08 282K
Group3_chainDm2.txt.gz 2006-11-04 07:08 350K
Group1_chainDm2.txt.gz 2006-11-04 07:08 384K
brhInparalog.txt.gz 2005-06-10 04:24 547K
modelRefGene.txt.gz 2005-06-10 04:24 774K
augustusGene.txt.gz 2015-07-26 10:11 843K
estOrientInfo.txt.gz 2016-06-12 06:06 866K
genscan.txt.gz 2005-02-23 16:08 939K
geneid.txt.gz 2006-01-19 05:51 971K
blastDm2FB.txt.gz 2005-07-28 05:23 971K
gc5Base.txt.gz 2005-02-23 16:08 1.1M
Group13_chainDm2Link.txt.gz 2006-11-04 07:08 1.3M
intronEst.txt.gz 2016-06-12 06:07 1.4M
mrnaOrientInfo.txt.gz 2020-08-18 04:58 1.4M
ensGene.txt.gz 2005-04-22 05:39 1.5M
blastHg17KG.txt.gz 2005-03-30 05:40 1.6M
Group16_chainDm2Link.txt.gz 2006-11-04 07:08 1.8M
Group15_chainDm2Link.txt.gz 2006-11-04 07:08 1.9M
Group14_chainDm2Link.txt.gz 2006-11-04 07:08 1.9M
Group12_chainDm2Link.txt.gz 2006-11-04 07:08 2.0M
Group9_chainDm2Link.txt.gz 2006-11-04 07:09 2.1M
Group4_chainDm2Link.txt.gz 2006-11-04 07:08 2.5M
simpleRepeat.txt.gz 2005-02-23 16:08 2.5M
Group10_chainDm2Link.txt.gz 2006-11-04 07:08 2.5M
Group8_chainDm2Link.txt.gz 2006-11-04 07:09 2.5M
all_est.txt.gz 2016-06-12 06:06 2.9M
ensPep.txt.gz 2005-04-22 05:39 2.9M
GroupUn_chainDm2.txt.gz 2006-11-04 07:09 3.0M
Group3_chainDm2Link.txt.gz 2006-11-04 07:08 3.0M
Group6_chainDm2Link.txt.gz 2006-11-04 07:09 3.1M
Group2_chainDm2Link.txt.gz 2006-11-04 07:08 3.1M
Group7_chainDm2Link.txt.gz 2006-11-04 07:09 3.1M
Group11_chainDm2Link.txt.gz 2006-11-04 07:08 3.4M
Group5_chainDm2Link.txt.gz 2006-11-04 07:09 3.7M
genscanPep.txt.gz 2005-02-23 16:08 4.3M
xenoRefFlat.txt.gz 2020-08-18 05:07 5.2M
Group1_chainDm2Link.txt.gz 2006-11-04 07:08 5.6M
xenoRefSeqAli.txt.gz 2020-08-18 05:20 5.6M
xenoRefGene.txt.gz 2020-08-18 05:07 5.8M
all_mrna.txt.gz 2020-08-18 04:58 7.0M
netDm2.txt.gz 2006-11-04 07:08 7.7M
rmsk.txt.gz 2005-02-23 16:07 8.7M
GroupUn_chainDm2Link.txt.gz 2006-11-04 07:09 61M
xenoMrna.txt.gz 2020-08-18 04:58 145M