This directory contains the Apis mellifera Amel_1.2 assembly
(apiMel1, Jul. 2004) from the Baylor College of Medicine HGSC Honey
Bee Genome Project. For more information, see the Baylor website:
http://www.hgsc.bcm.tmc.edu/projects/honeybee/.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=apiMel1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/apiMel1/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the annotations in this directory are freely usable for any purpose.
For conditions of use regarding the A. mellifera sequence data, see
http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html.
Name Last modified Size Description
Parent Directory -
bigFiles.txt.gz 2024-11-24 03:24 33
bigFiles.sql 2024-11-24 03:24 1.4K
tableList.txt.gz 2024-11-24 03:24 2.3K
tableList.sql 2024-11-24 03:24 1.6K
tableDescriptions.txt.gz 2024-11-23 02:03 4.6K
tableDescriptions.sql 2024-11-23 02:03 1.4K
hgFindSpec.txt.gz 2023-03-28 13:46 654
hgFindSpec.sql 2023-03-28 13:46 1.8K
trackDb.txt.gz 2023-03-28 13:46 13K
trackDb.sql 2023-03-28 13:46 2.1K
gbLoaded.txt.gz 2020-08-20 21:06 43K
gbLoaded.sql 2020-08-20 21:06 1.6K
xenoRefSeqAli.txt.gz 2020-08-20 21:06 11M
xenoRefSeqAli.sql 2020-08-20 21:06 2.1K
xenoRefFlat.txt.gz 2020-08-20 21:06 9.8M
xenoRefFlat.sql 2020-08-20 21:06 1.7K
xenoRefGene.txt.gz 2020-08-20 21:06 11M
xenoRefGene.sql 2020-08-20 21:06 2.0K
mrnaOrientInfo.txt.gz 2020-08-20 20:23 1.4M
mrnaOrientInfo.sql 2020-08-20 20:23 1.8K
all_mrna.txt.gz 2020-08-20 20:23 6.2M
all_mrna.sql 2020-08-20 20:23 2.1K
intronEst.txt.gz 2016-06-05 08:57 1.2M
intronEst.sql 2016-06-05 08:57 2.1K
estOrientInfo.txt.gz 2016-06-05 08:57 805K
estOrientInfo.sql 2016-06-05 08:57 1.8K
all_est.txt.gz 2016-06-05 08:56 2.7M
all_est.sql 2016-06-05 08:56 2.1K
xenoMrna.txt.gz 2016-02-21 09:43 121M
xenoMrna.sql 2016-02-21 09:42 2.4K
microsat.txt.gz 2015-08-23 09:48 43K
microsat.sql 2015-08-23 09:48 1.5K
augustusGene.txt.gz 2015-07-26 10:05 711K
augustusGene.sql 2015-07-26 10:05 1.9K
grp.txt.gz 2014-03-02 03:37 223
grp.sql 2014-03-02 03:37 1.4K
simpleRepeat.sql 2013-10-01 12:48 1.1K
rmsk.sql 2013-10-01 12:48 1.1K
netSyntenyDm1.sql 2013-10-01 12:48 1.3K
netDm2.sql 2013-10-01 12:48 1.3K
history.sql 2013-10-01 12:48 537
gold.sql 2013-10-01 12:48 799
genscanPep.sql 2013-10-01 12:48 330
genscan.sql 2013-10-01 12:48 748
gcPercent.sql 2013-10-01 12:48 546
gbDelete_tmp.sql 2013-10-01 12:48 326
gap.sql 2013-10-01 12:48 722
chromInfo.sql 2013-10-01 12:48 396
chainDm2Link.sql 2013-10-01 12:48 577
chainDm2.sql 2013-10-01 12:48 878
blastDm1FB.sql 2013-10-01 12:48 1.3K
netDm2.txt.gz 2006-01-19 05:51 2.6M
chainDm2Link.txt.gz 2006-01-19 05:51 19M
chainDm2.txt.gz 2006-01-19 05:51 1.2M
gbDelete_tmp.txt.gz 2005-09-28 04:51 180K
genscan.txt.gz 2005-01-09 04:31 841K
simpleRepeat.txt.gz 2004-12-22 13:07 2.2M
rmsk.txt.gz 2004-12-22 13:07 7.3M
netSyntenyDm1.txt.gz 2004-12-22 13:07 31K
history.txt.gz 2004-12-22 13:07 232
gold.txt.gz 2004-12-22 13:07 289K
genscanPep.txt.gz 2004-12-22 13:07 4.0M
gcPercent.txt.gz 2004-12-22 13:07 97K
gap.txt.gz 2004-12-22 13:07 143K
chromInfo.txt.gz 2004-12-22 13:07 52K
blastDm1FB.txt.gz 2004-12-22 13:06 914K