This directory contains a dump of the UCSC genome annotation database
for the Feb. 2003 release of the A. gambiae genome (anoGam1) from
the International Anopheles Genome Project (version MOZ2).
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=anoGam1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu,
then go to the directory goldenPath/anoGam1/database/. To download
multiple files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
The A. gambiae sequence is made freely available by The International
Anopheles Genome Project. All the annotations in this directory are
freely available for public use.
Name Last modified Size Description
Parent Directory -
chr2L_gap.txt.gz 2004-08-09 19:10 171
chr2L_gold.txt.gz 2004-08-09 19:10 245
chr2L_rmsk.txt.gz 2004-08-09 19:10 564K
chr2R_gap.txt.gz 2004-08-09 19:10 325
chr2R_gold.txt.gz 2004-08-09 19:10 489
chr2R_rmsk.txt.gz 2004-08-09 19:10 651K
chr3L_gap.txt.gz 2004-08-09 19:10 327
chr3L_gold.txt.gz 2004-08-09 19:10 486
chr3L_rmsk.txt.gz 2004-08-09 19:11 444K
chr3R_gap.txt.gz 2004-08-09 19:11 171
chr3R_gold.txt.gz 2004-08-09 19:11 235
chr3R_rmsk.txt.gz 2004-08-09 19:11 556K
chrM_gap.txt.gz 2004-08-09 19:11 33
chrM_rmsk.txt.gz 2004-08-09 19:11 1.0K
chrU_gap.txt.gz 2004-08-09 19:11 99K
chrU_gold.txt.gz 2004-08-09 19:11 144K
chrU_rmsk.txt.gz 2004-08-09 19:11 801K
ensGene.txt.gz 2004-08-09 19:11 790K
chrX_gap.txt.gz 2004-08-09 19:11 194
chrX_gold.txt.gz 2004-08-09 19:11 273
chrX_rmsk.txt.gz 2004-08-09 19:11 423K
chromInfo.txt.gz 2004-08-09 19:11 155
ensGtp.txt.gz 2004-08-09 19:12 156K
ensPep.txt.gz 2004-08-09 19:12 3.3M
genscanPep.txt.gz 2004-08-09 19:13 7.6M
history.txt.gz 2004-08-09 19:13 315
simpleRepeat.txt.gz 2004-08-09 19:15 1.6M
gcPercent.txt.gz 2004-10-24 04:18 85K
genscan.txt.gz 2005-01-09 04:31 1.3M
anoEstExpressed.txt.gz 2005-06-10 04:23 20K
anoEstNcl.txt.gz 2005-06-10 04:23 1.0M
anoEstTcl.txt.gz 2005-06-10 04:24 539K
blastDm2FB.txt.gz 2005-07-28 05:23 1.3M
geneid.txt.gz 2005-09-23 04:48 897K
gbDelete_tmp.txt.gz 2005-09-28 04:49 180K
chrM_intronEst.sql 2008-03-18 03:23 2.2K
chrM_intronEst.txt.gz 2008-03-18 03:23 106
anoEstExpressed.sql 2013-10-01 12:48 307
anoEstNcl.sql 2013-10-01 12:48 946
anoEstTcl.sql 2013-10-01 12:48 946
blastDm2FB.sql 2013-10-01 12:48 1.3K
chr2L_gap.sql 2013-10-01 12:48 706
chr2L_gold.sql 2013-10-01 12:48 783
chr2L_rmsk.sql 2013-10-01 12:48 1.0K
chr2R_gap.sql 2013-10-01 12:48 706
chr2R_gold.sql 2013-10-01 12:48 783
chr2R_rmsk.sql 2013-10-01 12:48 1.0K
chr3L_gap.sql 2013-10-01 12:48 706
chr3L_gold.sql 2013-10-01 12:48 783
chr3L_rmsk.sql 2013-10-01 12:48 1.0K
chr3R_gap.sql 2013-10-01 12:48 706
chr3R_gold.sql 2013-10-01 12:48 783
chr3R_rmsk.sql 2013-10-01 12:48 1.0K
chrM_gap.sql 2013-10-01 12:48 615
chrM_rmsk.sql 2013-10-01 12:48 1.0K
chrU_gap.sql 2013-10-01 12:48 704
chrU_gold.sql 2013-10-01 12:48 781
chrU_rmsk.sql 2013-10-01 12:48 1.0K
chrX_gap.sql 2013-10-01 12:48 704
chrX_gold.sql 2013-10-01 12:48 781
chrX_rmsk.sql 2013-10-01 12:48 1.0K
chromInfo.sql 2013-10-01 12:48 396
ensGene.sql 2013-10-01 12:48 1.0K
ensGtp.sql 2013-10-01 12:48 438
ensPep.sql 2013-10-01 12:48 322
gbDelete_tmp.sql 2013-10-01 12:48 326
gcPercent.sql 2013-10-01 12:48 546
geneid.sql 2013-10-01 12:48 1.0K
genscan.sql 2013-10-01 12:48 748
genscanPep.sql 2013-10-01 12:48 330
history.sql 2013-10-01 12:48 537
simpleRepeat.sql 2013-10-01 12:48 1.1K
grp.sql 2014-03-02 03:37 1.4K
grp.txt.gz 2014-03-02 03:37 223
chainDm6.sql 2014-12-14 08:42 1.7K
chainDm6.txt.gz 2014-12-14 08:42 2.2M
chainDm6Link.sql 2014-12-14 08:42 1.5K
chainDm6Link.txt.gz 2014-12-14 08:42 16M
netDm6.sql 2014-12-14 08:42 2.1K
netDm6.txt.gz 2014-12-14 08:42 1.8M
augustusGene.sql 2015-07-26 10:05 1.9K
augustusGene.txt.gz 2015-07-26 10:05 713K
microsat.sql 2015-08-23 09:42 1.5K
microsat.txt.gz 2015-08-23 09:42 46K
chr2L_est.sql 2016-06-12 06:05 2.4K
chrU_est.sql 2016-06-12 06:05 2.4K
chrU_est.txt.gz 2016-06-12 06:05 339K
chrU_intronEst.sql 2016-06-12 06:05 2.4K
chrU_intronEst.txt.gz 2016-06-12 06:05 129K
chr2L_est.txt.gz 2016-06-12 06:05 1.3M
chr2R_intronEst.sql 2016-06-12 06:05 2.4K
chr3L_est.sql 2016-06-12 06:05 2.4K
chr3L_est.txt.gz 2016-06-12 06:05 863K
chr2R_intronEst.txt.gz 2016-06-12 06:05 958K
chr3L_intronEst.sql 2016-06-12 06:05 2.4K
chr3L_intronEst.txt.gz 2016-06-12 06:05 462K
chrM_est.sql 2016-06-12 06:05 2.4K
chrM_est.txt.gz 2016-06-12 06:05 207K
chrM_mrna.sql 2016-06-12 06:05 2.4K
chrM_mrna.txt.gz 2016-06-12 06:05 665
chrX_est.sql 2016-06-12 06:05 2.4K
chrX_est.txt.gz 2016-06-12 06:05 540K
chr2R_est.sql 2016-06-12 06:05 2.4K
chr2R_est.txt.gz 2016-06-12 06:05 1.8M
estOrientInfo.sql 2016-06-12 06:05 1.9K
chr3R_est.sql 2016-06-12 06:05 2.4K
estOrientInfo.txt.gz 2016-06-12 06:05 1.7M
all_est.sql 2016-06-12 06:05 2.4K
chr3R_est.txt.gz 2016-06-12 06:05 1.2M
all_est.txt.gz 2016-06-12 06:05 6.1M
chrU_mrna.sql 2016-06-12 06:06 2.4K
chrU_mrna.txt.gz 2016-06-12 06:06 241K
chr2L_intronEst.sql 2016-06-12 06:06 2.4K
chr2L_intronEst.txt.gz 2016-06-12 06:06 658K
chr3R_intronEst.sql 2016-06-12 06:06 2.4K
chr3R_intronEst.txt.gz 2016-06-12 06:06 631K
chrX_intronEst.sql 2016-06-12 06:06 2.4K
chrX_intronEst.txt.gz 2016-06-12 06:06 248K
chrX_mrna.sql 2017-04-23 10:32 2.4K
chrX_mrna.txt.gz 2017-04-23 10:32 145K
chr2R_mrna.sql 2017-11-26 05:29 2.4K
chr2R_mrna.txt.gz 2017-11-26 05:29 1.0M
chr2L_mrna.sql 2019-07-14 05:14 2.4K
chr2L_mrna.txt.gz 2019-07-14 05:14 565K
chr3R_mrna.sql 2020-03-01 04:46 2.4K
chr3R_mrna.txt.gz 2020-03-01 04:46 656K
chr3L_mrna.sql 2020-03-01 04:47 2.4K
chr3L_mrna.txt.gz 2020-03-01 04:47 394K
all_mrna.sql 2020-03-01 04:47 2.4K
all_mrna.txt.gz 2020-03-01 04:47 3.0M
mrnaOrientInfo.sql 2020-03-01 04:47 1.9K
mrnaOrientInfo.txt.gz 2020-03-01 04:47 721K
xenoMrna.sql 2020-08-20 19:42 2.4K
xenoMrna.txt.gz 2020-08-20 19:42 118M
xenoRefGene.sql 2020-08-20 20:23 2.0K
xenoRefGene.txt.gz 2020-08-20 20:23 6.5M
xenoRefFlat.sql 2020-08-20 20:23 1.7K
xenoRefFlat.txt.gz 2020-08-20 20:23 5.8M
xenoRefSeqAli.sql 2020-08-20 20:23 2.1K
xenoRefSeqAli.txt.gz 2020-08-20 20:23 6.6M
gbLoaded.sql 2020-08-20 20:23 1.7K
gbLoaded.txt.gz 2020-08-20 20:23 210K
trackDb.sql 2023-03-28 13:46 2.1K
trackDb.txt.gz 2023-03-28 13:46 27K
hgFindSpec.sql 2023-03-28 13:46 1.8K
hgFindSpec.txt.gz 2023-03-28 13:46 905
tableDescriptions.sql 2024-11-16 02:03 1.4K
tableDescriptions.txt.gz 2024-11-16 02:03 5.1K
tableList.sql 2024-11-17 03:31 1.6K
tableList.txt.gz 2024-11-17 03:31 4.5K
bigFiles.sql 2024-11-17 03:31 1.4K
bigFiles.txt.gz 2024-11-17 03:31 33